Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03422 ATGGCTTCTTTTATTCAGCTGTGTTCTTTCCTTTTCCCTTTGTTGTCAACTTCATTTGTTAGAGTTTTTGCCTTTGAAGTTTCAATCAAAACAACTTCTTTGGCTCCTTTAAATTGCTCTGCAAACATCAGGACATGTGATGCCTTGCTATACCACATAAACCAAAATCACACAATTGAAGATATTGCTTCTTTTTACTCTGTTAATTCTTCCCAAATCAATCCTATAATGTATGGAACAAGACAAGATTACCTCATAAAAGTACCTTGTTCTTGCAAAGACACCAATGACCTTAGCGGATATTTCTATGATACAACCTACACAGTTAGGCTACATGACTCTTTTGTGAACATTTCAAACCTGATTTATAGTGGCCAAGCCTGGCCAAATAACAGTCTATTGTTTCCAGATGAGAATTTAGCAATACATATTCCATGTGGATGTTCAGAAAGTGATTCTCAAATAGTTGTCACCTACACAGTGCAGCAGAATGATACACCGACAACGATTGCTAATCTGCTAAATGCTACACTGGCTGGCATGCTGAGTTTGAATAAAATCCTGGTTCAGAACCCTGAATTCATAGATATTGGTTGGGTTTTATTTGTCCCAATGGAATTGAAAGGGCTTCCAGTTTCTAACAAAGAAGTGGCAGAAAAGAAGCATAAGTGGACCATAATCATTGGCATCTTAGCGGGAGTGACATTGCTTTCAGTTATTTCAATGATCGTTATCATTTTCAGGAGAAGAAAGAATGCCTATAAAATCAGCAAAGAACATTCACATGCTGTCTCTAGAAGATCAATTGCCAATAGAAATATTTCCTCAAATATCCTTAGCCTTCATAAGGAATATATGGAAGATGTAATGTCACTAGAATCAGACATGCCAATAATCTATAACCTTGAGGAGATTGAAGAGGCTACAAATAACTTTGATGAATCTCAAATAATTGGAAGCGGTGGATATGGGAGTGTGTATTTTGGAATGTTAGGAAAGAAGGAGGTTGCTGTGAAGAAGATGAGATCTAATAAATCTAAAGAGTTCTATGCAGAACTCAAGGTCTTATGTAAGATCCATCATATCAACATTGTAAGTGATATTGATACTTCTTATGAGATGTTTTCTGACATAGTGGAGTTGTTGGGTTATGCCAGCGGAGAAGATCACCTTTATTTGGTGTATAAGTTTGTGTCAAATGGATCTCTCAGTGATCATCTTCATAATCCATTACTGAAAGGCTACCAGCCTCTTTCTTGGAATTCCAGGGTTCAGATTGCACTGGATGCTGCAAAAGGTCTTGAATATATACATGATCATACAAAAGCACGATATGTGCACCGAGATATAAAGACTAGCAATATTCTTCTTGATGAGAAGCTAAGAGCAAAGGTAGGAGATTTTGGACTTGCAAAGCTGGTAGACCGAACTAATGATGAAAATTTTATAGCAACAAGGCTTGTTGGGACACCAGGCTACCTTCCACCAGAATCTCTGAAGGAGCTTCAGGTGACCCCAAAAACTGATGTGTTTGCATTTGGAGTGGTCCTGTTAGAACTTTTAACAGGAAAACGTGCACTATTTCGAGACAGCCAAGAAGCCTCCAAAATGAAATCACTTATTACTGTTGTTAATCAAATATTCCAAGATGATGACCCAGAGACTGCTTTGGAAGATGCCGTAGATAAGAATCTTGAAGCCAGCTATCCAATGGAAGATGTCTACAAGATGGCAGAAATAGCTAAGTGGTGCTTGCACGAAGATCCAGTGGAAAGGCCTGAAATGAGGGATATCGTTGGGGCATTGTCACAGATTGTGATGTCATCGATAGAGTGGGAAGCATCACTAGGCGGAAACAGCGAGGTCTTTAGCGGGTTGTATAGTGGAAGATAA 1893 0.3856 MASFIQLCSFLFPLLSTSFVRVFAFEVSIKTTSLAPLNCSANIRTCDALLYHINQNHTIEDIASFYSVNSSQINPIMYGTRQDYLIKVPCSCKDTNDLSGYFYDTTYTVRLHDSFVNISNLIYSGQAWPNNSLLFPDENLAIHIPCGCSESDSQIVVTYTVQQNDTPTTIANLLNATLAGMLSLNKILVQNPEFIDIGWVLFVPMELKGLPVSNKEVAEKKHKWTIIIGILAGVTLLSVISMIVIIFRRRKNAYKISKEHSHAVSRRSIANRNISSNILSLHKEYMEDVMSLESDMPIIYNLEEIEEATNNFDESQIIGSGGYGSVYFGMLGKKEVAVKKMRSNKSKEFYAELKVLCKIHHINIVSDIDTSYEMFSDIVELLGYASGEDHLYLVYKFVSNGSLSDHLHNPLLKGYQPLSWNSRVQIALDAAKGLEYIHDHTKARYVHRDIKTSNILLDEKLRAKVGDFGLAKLVDRTNDENFIATRLVGTPGYLPPESLKELQVTPKTDVFAFGVVLLELLTGKRALFRDSQEASKMKSLITVVNQIFQDDDPETALEDAVDKNLEASYPMEDVYKMAEIAKWCLHEDPVERPEMRDIVGALSQIVMSSIEWEASLGGNSEVFSGLYSGR. 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03422 630 Pfam LysM domain 159 204 IPR018392 -
Seca12g03422 630 CDD LysM 157 203 IPR018392 -
Seca12g03422 630 Pfam Protein kinase domain 313 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03422 630 SUPERFAMILY Protein kinase-like (PK-like) 293 602 IPR011009 -
Seca12g03422 630 ProSiteProfiles LysM domain profile. 157 203 IPR018392 -
Seca12g03422 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Seca12g03422 630 SUPERFAMILY LysM domain 157 204 IPR036779 -
Seca12g03422 630 Gene3D LysM domain 149 209 IPR036779 -
Seca12g03422 630 ProSiteProfiles Protein kinase domain profile. 312 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03422 630 Gene3D Transferase(Phosphotransferase) domain 1 398 615 - -
Seca12g03422 630 Gene3D Phosphorylase Kinase; domain 1 290 397 - -
Seca12g03422 630 SMART LysM_2 158 204 IPR018392 -
Seca12g03422 630 FunFam PTI1-like tyrosine-protein kinase 3 398 616 - -
Seca12g03422 630 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 30 624 IPR044812 GO:0019199|GO:0045087
Seca12g03422 630 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Seca12g03422 630 SMART serkin_6 312 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03422 Seca-Chr12 74047075 74051895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03422 250 630 Receptor kinase-like Gene Family AT1G51940 45.478 1.87e-112 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca12g03422 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03422 - - gmx:100791718 943.725