Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03414 ATGTCTTTTCCTCTTACTACACCTTGTGCCCACAACATCTGCAAAGCCTGTCTGGAGGGAGCCTTTTCTGGCCAAAGTTTCATCAGAAAGAGGGAATGTGAAAGAGGACGTACTTTAAGGGCACAAAAGAACATTATGAAATGCCCATCATGTTCAATTGACATAGCTGAGTTTCTTCAGAATCCTCAGGTACAACGATACATCTTTTTAGTTAGATTTTTAGGAATTGAACTGCCCTAG 240 0.4083 MSFPLTTPCAHNICKACLEGAFSGQSFIRKRECERGRTLRAQKNIMKCPSCSIDIAEFLQNPQVQRYIFLVRFLGIELP. 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03414 79 ProSitePatterns Zinc finger RING-type signature. 9 18 IPR017907 -
Seca12g03414 79 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Seca12g03414 79 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 66 IPR045134 -
Seca12g03414 79 SUPERFAMILY RING/U-box 4 64 - -
Seca12g03414 79 Pfam RING-type zinc-finger 4 49 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03414 Seca-Chr12 73816508 73816747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03414 1 71 C2H2 Transcription Factor Family AT5G39550 57.746 1.32e-23 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03414 K10638 - gmx:100781044 120.938