Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03411 ATGGATGTGGAACTCCCAGCATCTGCAAATGAGTCTCAACAACAAAAATTTGCTCTTCCTGTGGATTCAGAACACAGGGCCACTGAATTTAGATTATTTTCCTTTGCTAAGCCTCACATGAGGGCATTTCATCTATCTTGGTTCTCTTTCTTCGCATGCTTTGTGTCTAGTTTTGCTGCAGCACCCCTTGTTCCTATAATTCGTGACAACCTGAACCTCACAGCCACTGACATTGGAAATGCTGGGGTAGCATCAGTTTCAGGTGCTGTTTTCGCTAGAATTGCCATGGGAACAGCTTGTGACTTGGTTGGACCTCGTCTTGCTTCTGCTTCTCTCATTCTCCTCACTGCACCAGCTGTGTACTTCACTTCCATTATCTCCTCAGCTACCTCCTACCTCCTTGTTCGCTTCTTCACTGGCTTTTCCTTAGCCACTTTTGTCTCAACACAGTTCTGGATGAGCTCCATGTTTTCCACCACAGTGGTTGGTTCAGCCAATGGACTTGCAGGTGGATGGGGAAACCTTGGAGGAGGAGCCACACAACTCATCATGCCACTTGTGTTTTCCCTCATCAGTGATATCGGTGCTACCAAATTCACAGCATGGAGAATTGCATTCTTTATCCCTGCTCTGTTGCAAATGATGACAGCATTTTCCATATTGATATTTGGGCAGGACATGCCAGATGGGAATTTCCATCGCTTGAAGAAGTCAGGGGATAAACCAAAAGATGAATTCTCAAAAGTTCTGTTTCATGGGGTTACCAATTATAGAGGATGGATTTTAGCATTGACTTATGGCTATTGCTTTGGGGTAGAGTTGACTGTGGACAACATCATAGCTGAATACTTCTATGATAGATTTAATCTGAAACTCCACACTGCTGGAATCATTGCTGCAAGCTTTGGCTTAGCTAATTTGTTTTCTAGACCTGGTGGGGGTTATCTATCAGATGCAATGGCAAAGAGGTTTGGGATGAGGGGTAGGTTATGGGCCTTATGGCTATGCCAAACCTTGGCTGGTGTGTTCTGCATAATTCTTGGTTTGGTAGGATCTTTAAGTGTATCCATCATTGTTATGATCATATTCTCTGTGTTTGTTCAAGCTGCATGTGGGTTGACCTTTGGAATTGTTCCTTTTGTCTCAAGAAGGTCATTAGGGGTCATATCTGGAATGACAGGAGGAGGAGGCAATGTGGGAGCAGTTGTTACCCAGCTAATTTTCTTCAAAGGATCAAGGTTTTCAAAAGAAAGGGGAATAACACTAATGGGTATCATGATCATAATATGTACCCTGCCTATATGCTTAATTTACTTTCCACAATGGGGTGGGATGTTTTTTGGTCCTTCATCTAACAAGGTCACAGAAGAAGATTACTACTTGGGTGAGTGGAACTCAAAGGAAAAGGAGAAAGGCTCTCATCATGCAAGCTTGAAATTTGCTGATAACAGCAGAAGTGAAAGGGGCAGAAAACAGAACACTTCAACTAGGCCTTCTGAGGATGTCACACCACCACATGTTTGA 1524 0.4337 MDVELPASANESQQQKFALPVDSEHRATEFRLFSFAKPHMRAFHLSWFSFFACFVSSFAAAPLVPIIRDNLNLTATDIGNAGVASVSGAVFARIAMGTACDLVGPRLASASLILLTAPAVYFTSIISSATSYLLVRFFTGFSLATFVSTQFWMSSMFSTTVVGSANGLAGGWGNLGGGATQLIMPLVFSLISDIGATKFTAWRIAFFIPALLQMMTAFSILIFGQDMPDGNFHRLKKSGDKPKDEFSKVLFHGVTNYRGWILALTYGYCFGVELTVDNIIAEYFYDRFNLKLHTAGIIAASFGLANLFSRPGGGYLSDAMAKRFGMRGRLWALWLCQTLAGVFCIILGLVGSLSVSIIVMIIFSVFVQAACGLTFGIVPFVSRRSLGVISGMTGGGGNVGAVVTQLIFFKGSRFSKERGITLMGIMIIICTLPICLIYFPQWGGMFFGPSSNKVTEEDYYLGEWNSKEKEKGSHHASLKFADNSRSERGRKQNTSTRPSEDVTPPHV. 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03411 507 Pfam Major Facilitator Superfamily 47 403 IPR011701 GO:0022857|GO:0055085
Seca12g03411 507 Gene3D MFS general substrate transporter like domains 34 232 IPR036259 -
Seca12g03411 507 MobiDBLite consensus disorder prediction 468 507 - -
Seca12g03411 507 Gene3D MFS general substrate transporter like domains 244 443 IPR036259 -
Seca12g03411 507 FunFam High affinity nitrate transporter 2.5 35 231 - -
Seca12g03411 507 MobiDBLite consensus disorder prediction 468 495 - -
Seca12g03411 507 CDD MFS_NRT2_like 43 436 IPR044772 GO:0015112
Seca12g03411 507 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 8 491 IPR044772 GO:0015112
Seca12g03411 507 SUPERFAMILY MFS general substrate transporter 29 437 IPR036259 -
Seca12g03411 507 FunFam Nitrate transporter 2.1 243 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03411 Seca-Chr12 73748946 73751329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03411 15 499 Inorganic Solute Cotransporters AT1G12940 74.433 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03411 K02575 - gmx:100787888 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03411 12 73748946 73751329 Seca12g03411 12 73748946 73751329 ECH