Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca12g03410 | ATGAGAAACGTGAAACAGAGTGATACGGCGGCGCTTTTGTACTCCTCCGACACGACGGGTGTGAGCAAGGGTGTGGTTCTCACGCATGGGAATTTCATCTCTGCTTCTGTGATGATTGGAATGGACGATGAATTAGCGGGGCAGATGCACGACATGTTCCTCTGCGTTTTGCCAATGTTTCATGTGTTTGGGCTTGCGGTTATTATCTACGCTCAGCTTCAGAAGGGAAACGCGGTGGTTTCTCTGAAGAGGTTTGAGTTTGAGGTTGTTTTGAAGACGATTGAGAAGTATAGGGTGACACATTTGTGGGTGGTGCCTCCCATTATACTTGAGGTTCTGTTTAACTCTACGTGCAAATTCCTAAATTTTATTTCCCATCTTTTTTTAATATTATTTTCTACTAATTAA | 408 | 0.4338 | MRNVKQSDTAALLYSSDTTGVSKGVVLTHGNFISASVMIGMDDELAGQMHDMFLCVLPMFHVFGLAVIIYAQLQKGNAVVSLKRFEFEVVLKTIEKYRVTHLWVVPPIILEVLFNSTCKFLNFISHLFLILFSTN. | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca12g03410 | 135 | Gene3D | - | 29 | 113 | - | - | |
| Seca12g03410 | 135 | Gene3D | - | 3 | 28 | - | - | |
| Seca12g03410 | 135 | Pfam | AMP-binding enzyme | 4 | 113 | IPR000873 | - | |
| Seca12g03410 | 135 | PANTHER | LONG-CHAIN-FATTY-ACID--COA LIGASE | 3 | 115 | - | - | |
| Seca12g03410 | 135 | SUPERFAMILY | Acetyl-CoA synthetase-like | 4 | 112 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca12g03410 | Seca-Chr12 | 73691890 | 73692297 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca12g03410 | 4 | 125 | Monolignol Biosynthesis Gene Families | AT4G05160 | 67.213 | 1.57e-53 | 174 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca12g03410 | K01904 | - | gmx:100797843 | 181.415 |