Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03407 ATGAAAATTGTTGTTGGAGCTGCAAAGGGTCTAGCTTTTCTTCATGAAGCAGAGAAACCAGTCATCTATAGAGATTTCAAAGCTTCCAACATCTTATTAGACTCAGATTACAATGCAAAACTTTCTGATTTTGGGTTGGCAAAAGATGGACCTGAAGGTGATGACACTGTGATGACACTCATGTTTCAACCAGAGTTATGGGCACACAAGGCTATGCGGCCCCAGAGTCACTTGACAACAATGAGTGACGTGTATAGCTTTGGAGTTGTGCTATTGGAGTTGCTAACTGGGAGAAGATCAGTGGACAAGAATAGACCTCCAAGGGAACAGAACCTAGTGGAATGGGCAAGGCCAATGTTACATGATTCAAGGGAACTTAGTAGGATAAAGAATCCTAGACTTGAAGGGCATTTTTCTGAGATGGGAAGTAAAAAAGCAGCTGCATTGGCTTACCAATGTCTCAACCATAGGCCAAAGAGTAGGCCTACAATGAGAGAAGTGGTTAAGATTTTCTAG 516 0.4225 MKIVVGAAKGLAFLHEAEKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTVMTLMFQPELWAHKAMRPQSHLTTMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVEWARPMLHDSRELSRIKNPRLEGHFSEMGSKKAAALAYQCLNHRPKSRPTMREVVKIF. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03407 171 Gene3D Transferase(Phosphotransferase) domain 1 1 171 - -
Seca12g03407 171 ProSiteProfiles Protein kinase domain profile. 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03407 171 PANTHER OS01G0588500 PROTEIN-RELATED 1 170 - -
Seca12g03407 171 SUPERFAMILY Protein kinase-like (PK-like) 2 169 IPR011009 -
Seca12g03407 171 Pfam Protein kinase domain 3 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03407 171 ProSitePatterns Serine/Threonine protein kinases active-site signature. 21 33 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03407 Seca-Chr12 73605735 73606708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03407 1 168 Glycoside Hydrolase AT3G07070 50.000 1.20e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca12g03407 Pkinase 2.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03407 - - gmx:100797003 268.085