Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03404 ATGCCTTCTTCTTCTTCTGCATCATCTTTTCTGCTCCTCTTCTTCCTCTGTTGCTTTGCAGCTCCTGTTCTGTCTGACCCAAGAGCCAAAAGGGCAGCTTTGTTATGCACCAACAGAACTGCAACATCAATGCCTCATCGTCAGGTTTTCATAGCAAACTTTTTGGCTGCAATGGATGCGTTGACCCCTCTGATCTCAAGACAAAGGTATGGTTCTGTTGTTAATGGGACTCAAAACGCCACCGTTTATGCTTTTGGTGAGTGCATGAAGGATCTTTCTCAATCAGATTGCAACATGTGCGTTGCACAGTGCAAGACCCAGATCCTCAGTTGTTTGCCATTTCAGAAAGGAACTCGTGGTGGAAGGCTCTTCTTTGATGGGTGTTACCTCAGGTATGATGACTACAATTTCTTCAATGAGAGTCTCAGTGTTCAAGACACCACCGTGTGTGGCACCAGTGATTTTCGTGGGAATGTTAGTGTTTATAAGGCCAATGCTTTGGAGTTAGTGAGAAATTTGAGCGTGTTGGCGCCCAAAAATGATGGGTTCTTTGTGGGGTCTGTGAATAGAAAGAATGTTTCTGTTTATGGGTTGGCTCAGTGCTGGGAGTTTGTCAATGGTAGTGGCTGCCAGAACTGTTTGGCAGATGCTGTTACTAGGATTTCTTTGTGTACTACAAAAGAAGAAGGGAGGGCATTGAATTCTGGTTGTTACTTGAGGTATTCCACACAAAAATTCTATAACAATTCAACCAATGATGCAGCTGCTGGAAATCATGGACACAGGAAAATAGCTACAATTCTGGCTGCATCTTCTGCTGCTGTGGCTCTTCTGCTGGTTGTTGCAACAGTTGTCTTCTTTATAAAGAAGAATGTAATGAAGAGGAGAAGAGAAAGAAGACAGTTTGGTGCACTTTTGGACACAGTGAACAAGTCCAAGCTAAATATGGCATATGAAATTCTTGAAAATGCAACAGATTACTTCAGTGATGCCAATAAGTTAGGACAAGGAGGATCAGGCTCAGTTTATAAAGGAGTTATGCCAGATGGAAGTACTGTGGCCGTTAAAAGGCTTAGCTTTAACACAACACAATGGGCAGATCATTTCTTCAATGAGGTTAATTTGATCAGTGGCATTCATCACAAAAATCTTGTAAAGCTTTTGGGGTGCAGCATTACAGGACCTGAAAGCCTCCTTGTTTATGAATATGTGCCTAACCAGAGTCTCCATGATCACCTTTCTGTTAGAAGGGTTTCTCAACCGATGACTTGGGAAATCAGGCATAAGATCATATTAGGAATTGCAGAGGGCATGGCTTACCTTCATGAGGAATCACATGTGAGAATCATTCATAGGGATATAAAATTGAGCAACATTCTGCTTGAAGAGGACTTCACACCCAAGATTGCTGATTTTGGACTTGCTAGATTATTTCCAGAAGACCAGTCTCACAGAAACACGGTTCATATACTATTCCTGCACAATTCTCTCAAAGTTTATTATATGTTCACATGTAGGGGTTATATGGCTCCTGAGTATGTAGTTCGTGGGAAGTTGACTGAGAAAGCAGATGTATACAGTTTCGGAGTTCTACTTGTTGAAATTGTATCTGGCAAAAGAAACAGTTCCTTTGTTCTAAATTCATCCTCTATCCTACAAACGGTTTGGAGCCTTTATGGATCAAATAGGCTATCTGAAATAGTTGATCCGACCCTAGAGGGTAATTTTCCTGCAGAGGAAGCATGCAAACTACTTCAGATAGGGTTGCTTTGTGCACAAGCATCTGCAGAGTTGAGACCATCAATGTCAGAAGTTGTTAAAATGATTAATGACAATCATGAAATTCCTCAGCCAACACAACCCCCATTTATTAATTCTGGTAGTTCAGAACTCAGCAAAACTTGTTTACCTGGATATAACAATTTTCAGCATGGATCCAACACCCAGTCTTCAGGGGATACCATGACTGAAAGTCTACTTGAGCCTAGATGA 1992 0.4152 MPSSSSASSFLLLFFLCCFAAPVLSDPRAKRAALLCTNRTATSMPHRQVFIANFLAAMDALTPLISRQRYGSVVNGTQNATVYAFGECMKDLSQSDCNMCVAQCKTQILSCLPFQKGTRGGRLFFDGCYLRYDDYNFFNESLSVQDTTVCGTSDFRGNVSVYKANALELVRNLSVLAPKNDGFFVGSVNRKNVSVYGLAQCWEFVNGSGCQNCLADAVTRISLCTTKEEGRALNSGCYLRYSTQKFYNNSTNDAAAGNHGHRKIATILAASSAAVALLLVVATVVFFIKKNVMKRRRERRQFGALLDTVNKSKLNMAYEILENATDYFSDANKLGQGGSGSVYKGVMPDGSTVAVKRLSFNTTQWADHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEYVPNQSLHDHLSVRRVSQPMTWEIRHKIILGIAEGMAYLHEESHVRIIHRDIKLSNILLEEDFTPKIADFGLARLFPEDQSHRNTVHILFLHNSLKVYYMFTCRGYMAPEYVVRGKLTEKADVYSFGVLLVEIVSGKRNSSFVLNSSSILQTVWSLYGSNRLSEIVDPTLEGNFPAEEACKLLQIGLLCAQASAELRPSMSEVVKMINDNHEIPQPTQPPFINSGSSELSKTCLPGYNNFQHGSNTQSSGDTMTESLLEPR. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03404 663 ProSiteProfiles Gnk2-homologous domain profile. 143 246 IPR002902 -
Seca12g03404 663 SMART serkin_6 328 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03404 663 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 83 643 - -
Seca12g03404 663 MobiDBLite consensus disorder prediction 642 663 - -
Seca12g03404 663 Pfam Protein kinase domain 329 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03404 663 FunFam Cysteine-rich receptor-like protein kinase 2 404 617 - -
Seca12g03404 663 CDD STKc_IRAK 334 610 - -
Seca12g03404 663 Gene3D Phosphorylase Kinase; domain 1 288 403 - -
Seca12g03404 663 Gene3D Transferase(Phosphotransferase) domain 1 404 620 - -
Seca12g03404 663 Gene3D - 31 137 IPR038408 -
Seca12g03404 663 Gene3D - 145 246 IPR038408 -
Seca12g03404 663 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Seca12g03404 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Seca12g03404 663 FunFam Cysteine-rich receptor-like protein kinase 3 146 246 - -
Seca12g03404 663 ProSiteProfiles Gnk2-homologous domain profile. 30 137 IPR002902 -
Seca12g03404 663 MobiDBLite consensus disorder prediction 642 657 - -
Seca12g03404 663 SUPERFAMILY Protein kinase-like (PK-like) 316 629 IPR011009 -
Seca12g03404 663 Pfam Salt stress response/antifungal 154 243 IPR002902 -
Seca12g03404 663 Pfam Salt stress response/antifungal 36 135 IPR002902 -
Seca12g03404 663 FunFam Cysteine-rich receptor-like protein kinase 2 293 403 - -
Seca12g03404 663 ProSiteProfiles Protein kinase domain profile. 328 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03404 663 FunFam Cysteine-rich receptor-like protein kinase 2 29 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03404 Seca-Chr12 73586761 73591028 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03404 21 487 Receptor kinase-like Gene Family AT1G70530 63.248 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g03404 Pkinase 8.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03404 - - gmx:100787359 996.497