Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03403 ATGGAGAAAGCAGTCCCTCTTATTGTCTATTCTCAATTCATTGTTTTCCTTCTCATGATTTCTCTATTACTATCAGCAACAGTAATAGCAGAACCAAGAGCCAAAACAATCAAAACAATATGTGGACATCAGCTAGAGCACAACACCACTATCTTTGTTCGAAATTTTGTTGCAACAATGGACAAGATCAGTGAACAGATGCGCAATACTGGCTATGGCACAGCAGTTGAAGGGACAGGAGGACCTGACACTAACTATGGCCTTGCTCAGTGCTATGGAGATCTTTCATTACTTGACTGTGTTTTATGTTATGCTGAGGCACGCACGGTTCTCCCCAAATGCTTCCCTAACAATGGTGGTCGAATATACCTTGATGGTTGCTTCATGAGGGCTGACAACTATAGCTTCTATAATGAGTATACAGGACCAGGAGATGAGGCTGTTTGTGAAAACACAACCAAGAAGAACCAGAGTTTTCAAGCAGCTGCAAAGAAGGCAGTTCTGAATGCAGTTCAAGCTGCCCCCAACAATAAGGGCTATGCAAGTGAGAAGGTTTCTGTGTCAGGAACAACAAATGAGTCAGCTTATGTTCTGGCTAATTGTTGGAGGAGTTTGGACATAAGGTCTTGCAAAGCATGTCTTGAGAATGCATCTTCTTCAATATTGGGATGCTTGCCCTGGTCAGAAGGGCGAGCACTGAACACTGGATGCTTCATGAGGTACTCAGACATGGATTTTCTTAACAAGAAACCAGAAAATGGAAGTTCAAGAGGTAATGCAGTAGTAATAGTGATTGCAGTAGTCAGTGCAGTGATTGTTTTGGTGGTTGGAATAGCTGTTGGGGTTTATATCCACAAACACAGATATATTCAAAAGAAACGAAGAGGTTCAAATGTTGCTGCAGAAAAGTTAGCTAAGAACCTTTACCACAATAGCTTGAACTTCAAGTACTCTACACTGGAGAAGGCTGCTGAATCTTTTAATGAAGCTAACAAGCTTGGACAAGGAGGATTTGGAACAGTTTATAAAGTAATTATTTCCTCTACAGACCTAAATTCCCACCATTTTACATATCAAAACCACTCTTACAATTTGCTATTGCAGGGAGTTCTGCCTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAATAACAGACATAGAGCAGCAGATTTCTACAATGAAGTGAACATAATTAGTAATGTGGAACACAAGAATCTAGTCAGATTGTTAGGATGCAGTTGTTCAGGGCCAGAAAGCCTGCTTGTATACGAATTTCTACCTAACCTAAGTCTTGATCGCTTCATATTTGATAAAGACAAAGGTAGAGAACTAAACTGGGAGAAGAGATATGACATTATCATTGGGACAGCTGAAGGATTGGTTTATCTGCATGAGAACTCCAAAATTAGGATAATTCATAGAGATATAAAAGCCAGCAACATCTTATTGGATGCAAGGCTCCGTGCTAAAATTGCAGATTTTGGTTTGGCCAGGTCCTTTCAAGAAGATAAGAGCCACATCAGTACAGCTATTGCAGGAACATTGGGTTATATGGCTCCAGAGTACCTAGCACATGGTCAGTTGACAGAGAAAGCAGACGTGTATAGTTTTGGAGTGTTACTGCTAGAAACAGTCACTGGGAGACAGAACAACAGGTGCAAAACATCAGAATATTTGGACAGCCTAGTTATAGTGACATGGAGACATTTTCAGTCAAGGACTACAGAACAATTAATTGATCCACATCTAGTGTCAGACAACAACCATAATAACAACGTTGTGAATGAGATTTTAAGAGTGGTGCACATAGGACTTCTATGCACACAAGAAATCCCTTCCTTACGACCATCTATGTCAAAGGCACTACAGATGCTAACAAAGGAGGAGGAACACTTGCCAGCTCCCTCTAATCCACCCTTTATAGATGAAAGTACCATGGAACTCCATGACCAAAATGATGACCCGTTTTATCCTCTCAATGCAGCAGACTCACTTGCTACTATGTCCCATAGCTCTTTTTATCCCAGGTAA 2037 0.407 MEKAVPLIVYSQFIVFLLMISLLLSATVIAEPRAKTIKTICGHQLEHNTTIFVRNFVATMDKISEQMRNTGYGTAVEGTGGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPKCFPNNGGRIYLDGCFMRADNYSFYNEYTGPGDEAVCENTTKKNQSFQAAAKKAVLNAVQAAPNNKGYASEKVSVSGTTNESAYVLANCWRSLDIRSCKACLENASSSILGCLPWSEGRALNTGCFMRYSDMDFLNKKPENGSSRGNAVVIVIAVVSAVIVLVVGIAVGVYIHKHRYIQKKRRGSNVAAEKLAKNLYHNSLNFKYSTLEKAAESFNEANKLGQGGFGTVYKVIISSTDLNSHHFTYQNHSYNLLLQGVLPDGREIAIKRLYFNNRHRAADFYNEVNIISNVEHKNLVRLLGCSCSGPESLLVYEFLPNLSLDRFIFDKDKGRELNWEKRYDIIIGTAEGLVYLHENSKIRIIHRDIKASNILLDARLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLETVTGRQNNRCKTSEYLDSLVIVTWRHFQSRTTEQLIDPHLVSDNNHNNNVVNEILRVVHIGLLCTQEIPSLRPSMSKALQMLTKEEEHLPAPSNPPFIDESTMELHDQNDDPFYPLNAADSLATMSHSSFYPR. 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03403 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Seca12g03403 678 ProSiteProfiles Protein kinase domain profile. 327 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03403 678 FunFam Cysteine-rich receptor-like protein kinase 2 428 635 - -
Seca12g03403 678 Pfam Protein tyrosine and serine/threonine kinase 330 625 IPR001245 GO:0004672|GO:0006468
Seca12g03403 678 Gene3D Transferase(Phosphotransferase) domain 1 428 635 - -
Seca12g03403 678 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
Seca12g03403 678 Pfam Salt stress response/antifungal 49 134 IPR002902 -
Seca12g03403 678 Pfam Salt stress response/antifungal 149 243 IPR002902 -
Seca12g03403 678 SMART serkin_6 327 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03403 678 Gene3D - 146 246 IPR038408 -
Seca12g03403 678 Gene3D - 33 136 IPR038408 -
Seca12g03403 678 SUPERFAMILY Protein kinase-like (PK-like) 309 656 IPR011009 -
Seca12g03403 678 CDD STKc_IRAK 333 629 - -
Seca12g03403 678 FunFam Cysteine-rich receptor-like protein kinase 3 145 246 - -
Seca12g03403 678 ProSiteProfiles Gnk2-homologous domain profile. 34 136 IPR002902 -
Seca12g03403 678 Gene3D Phosphorylase Kinase; domain 1 286 427 - -
Seca12g03403 678 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 86 655 - -
Seca12g03403 678 FunFam Cysteine-rich receptor-like protein kinase 2 34 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03403 Seca-Chr12 73564623 73568252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03403 3 678 Receptor kinase-like Gene Family AT1G70520 62.832 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g03403 PK_Tyr_Ser-Thr 8.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03403 - - ccaj:109816764 1069.68