Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03402 ATGGAGGAGGAAATGTATGGAATGCCGTCGGCAGCGGCGGCGGAGTACTCGGACAAGGCGCTGATGACGCCGGAGAGTGTGATATTCCCGGCGGAGTATCACAGTTACTTGATGTCTTCCGGCGGCCGGATTCCGATGTTCGGATCCGACGAGTTACTCTCCGCCATCACCGCCACCGCCGCCACTAGCGCCGAAGCCGAACCCTCCGGCAACAATATCATCCCCGAAATTCAGCGCCACCACGACGGTTCCTCTTCCTCCTCCTCTCTCATCAAAGCAAAAATCGCCTCTCACCCTCACTACCCTCGCCTCCTCCAAGCCTACATCGATTGCCAAAAGGTAGGAGCGCCTCCAGAAATTGCGTGTTTGTTAGACGAAATCCGGCGAGAAAACGACGTTTACAAGAGAGACGTTGTTTCCACGTGTTATGGAGCCGATCCCGAGCTCGATGAGTTTATGGAAACCTACTGTGAGTTGCTGGTGAAATATAAATCTGATCTGACGCGGCCTTTTGACGAAGCTACCACCTTCCTCAACAAGATCGAAACTCAACTCAGCGATCTCTGCACTGGTGCTTCCGTTCCTGCCCTTTCCGATGATGGTGGTGTATCATCAGAAGATGGTTTTAGTACTGGAGATGGCGATACCCAAGATAGTCAATTACGGGTTGAAGATCGAGAGCTTAAGGATAAACTCTTACGCAAGTTTGGAAGTCACATTGGTTCTTTGAAATTGGAATTTTCAAAGAAGAAAAAGAGGGGTAAGTTACCGAAAGACGCCAGGCAAACACTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAAGTGATAAGATTGCGCTGGCTAATTCAACTGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAACCATCTGAGAATATGCAATTTTCAATGATGGAAAATCTCACCGGACAGTACCATACTGATGAATGA 993 0.4864 MEEEMYGMPSAAAAEYSDKALMTPESVIFPAEYHSYLMSSGGRIPMFGSDELLSAITATAATSAEAEPSGNNIIPEIQRHHDGSSSSSSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLDEIRRENDVYKRDVVSTCYGADPELDEFMETYCELLVKYKSDLTRPFDEATTFLNKIETQLSDLCTGASVPALSDDGGVSSEDGFSTGDGDTQDSQLRVEDRELKDKLLRKFGSHIGSLKLEFSKKKKRGKLPKDARQTLLQWWNVHYKWPYPTESDKIALANSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLTGQYHTDE. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03402 330 ProSitePatterns 'Homeobox' domain signature. 285 308 IPR017970 GO:0000981|GO:0006355
Seca12g03402 330 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 69 318 - -
Seca12g03402 330 ProSiteProfiles ELK domain profile. 227 247 IPR005539 GO:0003677
Seca12g03402 330 SMART KNOX1_2 89 133 IPR005540 GO:0003677|GO:0005634
Seca12g03402 330 SMART HOX_1 249 314 IPR001356 GO:0003677
Seca12g03402 330 CDD homeodomain 259 311 IPR001356 GO:0003677
Seca12g03402 330 SUPERFAMILY Homeodomain-like 248 320 IPR009057 -
Seca12g03402 330 SMART KNOX2_2 139 190 IPR005541 GO:0003677|GO:0005634
Seca12g03402 330 Pfam KNOX1 domain 91 132 IPR005540 GO:0003677|GO:0005634
Seca12g03402 330 SMART ELK_2 227 248 IPR005539 GO:0003677
Seca12g03402 330 Pfam KNOX2 domain 143 189 IPR005541 GO:0003677|GO:0005634
Seca12g03402 330 Pfam Homeobox KN domain 267 306 IPR008422 GO:0003677|GO:0006355
Seca12g03402 330 ProSiteProfiles 'Homeobox' domain profile. 247 310 IPR001356 GO:0003677
Seca12g03402 330 FunFam Homeobox protein knotted-1-like 2 252 314 - -
Seca12g03402 330 Pfam ELK domain 227 248 IPR005539 GO:0003677
Seca12g03402 330 Gene3D - 246 320 - -
Seca12g03402 330 MobiDBLite consensus disorder prediction 198 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03402 Seca-Chr12 73515627 73525003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03402 5 330 Homeobox Transcription Factor Family AT1G23380 65.179 1.33e-146 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca12g03402 KNOX2 5.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03402 - - gmx:100786454 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03402 12 73515627 73525003 Seca12g03402 12 73515627 73525003 ECH
Seca12g03402 12 73515627 73525003 Seca12g03402 12 73515627 73525003 PCT