Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03388 ATGCAGCCTCTCTTTAGAATTGACAGAATAAAGTTATCTAAACAAATGAATAAAATTTTAGCTCACAGTGAAACTGTGCTTTTGATAATAATGGGGAGTGAAGTAGATGTTCAAAGAATTGAACTTGGTCACACACGAATAGGCAACTGCATGATACACCAGTGGATACCTAACAGGAGTTTCTCATTGGTCAAAAGTTTCTTGGATGGTATAAGCAAATTATCTCCCAGGCTTGTTGTTTTAGTGGAAGATGAACTGTTCAATTTTTCTAGACTCAAATCCATGCCCTTTGTGGAATTCTTCTATGAGGCTTTACATCACTACACTGCACTTTCTGATTCACTTGCTAGTAGTATGTGGGTCTCCTCTCAAGTTACCATACCACACATTGATGCAGTTTGCTTTCTTCTGAGGTCGCACACCATTGCGTTCATCGGCAAAACTGTTTCTCGTCTTCTATCAAGCTCCCTTTCCAGGGAGTTCTTCATGGTTTGCACAAGAATGGAGGCTAGAGTGGAACGATTGGAGAAACTGATCGAGGAGGAGCGAATTCAAGAAAGAAGCGACAGGGAAAGCTTTGAATCTTGGGTTGAGCGAATCGCCAGAGAAAGAATTGAAGCCGAGCCGGGCAGAGGTGCTGTGGGTTTCGCAGCCGAGCCAAGCAGGGGTGCCGTGAATTTGGAAGCCGAGGCGAGCAGGGGGGCAGAAAGATGGCGGAAACTTGATATTCCTCTATTCTCGGGGGAAGATGCTTTCGGATGGTTGAGCCGAGTTGAGAGATATTTCCAAATGAAGGAGGTGACCGAGGAGGAGAGGTTACCAATAATAATGGTGGCGATGGAAGGCAAGGCACTACCGTGGTTCAGGTGGTGGGAATATTGCACGCCAAAACCGACTTGGGCGGCATTCCGGGATGCCATAATTCGGAGGTTCCAACCGGTCATGATACAAAGCTCCTTTGAACCGTTGATGGGGATAAAACAGACGGGTTCCGTGGAAGAGTACCGGGAGCATTTTGAACTTTATGCGAATCCCAGGAAAGACACAGACGCGGAATTCCTTAAATCAATTTTCTTGAATGGATTAAAAGAAGAGGTCAGGGCTGAGTTAAGGTTGCATCAATGGCGATCCTTGCCAGAAATGATGGACCTTGCCCAACGGGCCGACGAGAGGAATAGAGCCCTTCAAAGGACTACGGGCGTGGGTTATGGTCGAGGAAACATAATCAAGAATTACCCTATAAGTCGGACAATCACAGTGGAGGCCGGGAGGAAGACTTATTCATCCAGCGGCACCCCATCCTTGGGTACAGCGAAGGAATCCACCAATACCCAACCGGCCAATAATTTGAGGGTAAAAGGAGGGAGCTTCAAGAAACTCTCAAATGATGAGTTAAATGAGAGACGAAAGAAGGGGCTATGTTTTAATTGTGATGAGAAGTTTGGGCCTAATCATGTTTGCAAGAACAAGAGATACCAGATCATGATATTAGAAGAAGATGAAAATGAGCCGGGAGAAGAAGAGGGGGAGACCGAAGTAGAAGAAATGGAATGCCAAGCATTACAACTCTCCTTGAATAGCATGACGGGGTTTACGTCTAAAAGATCCATCATAGCCCTGGGAGAAATAAAGGGGCGACTAGTTCAGGTGCTTATTGACTGTGGAGCTTCCCACAATTTCCTTTCGGCAAAGCTGGTTAAAGAATTAGACTTAGCGGTGGAAGACACGCCTCCTTATCATGTGGAGGTCAGAGATGGCAGAAAGATTCAGGGCAGAGGGAAGTGTTCGCAACTGGGTTTGCAGTTGCAAGGATGGCGCATACAACAAGACTTTTTTATTTTTGATTTGGGAGGTGCGGAGGTGGTGTTGGGCATGGAGTGGCTGGCAAGTTTGGGAGACATCAGGGCGAATTTTCAGGAGCTTACTCTAATGATCCCCAGAAGGGGAGGCACCATGGTGTTGAAAGGGGATCCATCTTTATCCAGAACGGCAGCATCATTCCGGTCAATCATGAAGGCTATACATGAAGATGGATTGGGATTTTTCTTAACTTGTGCTGAAGTGTTTGAAGATCATCAACAGAGGGAGGAGGTTCCTCCGCGTGTTTCACATATGTTAGAAGAATTTCTGGAAGTGTTTCAAGAACCTCAAGGTCCGGGAGCACAATCATGCTATTGTCTTGAAAGAAGGAGCCATGATACCGAACTTGAGACCCTACAGGTACCCTCACTATCAAAAAATGAGATGGAAAAAATGATTAATGATATGTTGTTGGCCGGAATCATTAGACCGAGTACAAGTCCTTATTCCAGTCCGGTAATTTTGGTTAAGAAGAAAGATGGGGGGTGGCGGTTCTGCGTTGACTATCGGGCTTTAAACAAAATTACAGTCCCAAACAAGTTTCCCATACCCATTATTGATGAGTTGCTGGATGAATTGGGTACTGCCACTATTTTCTCAAAGCTAGATCTCAAATCGGGCCGGGATGAAGAGGAGCACGAGGTTCATTTACGATCAGTTTTGCGGGTGTTGAGAGAAGCCAATCTGGTAGTTAACAAAAAGAAGTGCAGTTTTGCTCAAGGGGAACTAGAATATTTGGGGCATGTCATCTCAGCAGAGGGAGTGTCTGCAGATCCTAAGAAGCTGGAAGTGATGGCTTCATGGCCGCAACCAAAGGACATCAAGGGGCTACGGGGATTCCTTGGCCTCACAGGCTATTATCGCAGATTTGTTGAGAATTATGGGAAGATTGCAAAGCCTCTAACTCAGCTCTTAAAAAAGGACAGTTTTCAGTGGAGTCCGGACGCTCAGGGGGCGATTGAAAAATTGAAAGAAGCCATGACAAAATTACCAATTCTGGCAGTCCCTGAGTTTTCAAAGAGCTTCATTGTGGAAACAGATGCCTCTAGCAGAGGACTTGGAGCGGTATTGTTACAAGCAAGCCGTTTGTGCCATCTGCTATCGAAGTCGAACATCACAGCCAAGCTTCCCCTTCCAGTTCGACCCTCTCTCTTGCACTCTCCCTCTGTTTCGATCTCCCTCTCCGTCTCTCTTCGATCCTTGTTTGCGGCTGCTTCTGATCATTTACCTGTGGCTTTCCTTAGTCAATCCTTATCAGAGAGGGGGCAACAAAAATCTGTTTATGAACGGGAACTCATGGCAATAGTGATGGCTGTTCAAAAATGGAGGCACTACTTGTTAGGGAGGCATTTCATCATACATACTGATCAACGCAGCTTGAGATTTCTGAATGAGCAGCGCCTACAGGGGGAAGAACAATTTAAGTGGACTTCCAAATTGATGGGATTTGATTTCGAGATTAAATATAAGCCCGGATGTGAAAATGGAATGGCCGATGCTCTATCAAGACGCATGACTTATGCCACAATTTCAGCCGTGCAGGTTGGAGAGTTAGAGGATTGGGCCTAA 3429 0.4573 MQPLFRIDRIKLSKQMNKILAHSETVLLIIMGSEVDVQRIELGHTRIGNCMIHQWIPNRSFSLVKSFLDGISKLSPRLVVLVEDELFNFSRLKSMPFVEFFYEALHHYTALSDSLASSMWVSSQVTIPHIDAVCFLLRSHTIAFIGKTVSRLLSSSLSREFFMVCTRMEARVERLEKLIEEERIQERSDRESFESWVERIARERIEAEPGRGAVGFAAEPSRGAVNLEAEASRGAERWRKLDIPLFSGEDAFGWLSRVERYFQMKEVTEEERLPIIMVAMEGKALPWFRWWEYCTPKPTWAAFRDAIIRRFQPVMIQSSFEPLMGIKQTGSVEEYREHFELYANPRKDTDAEFLKSIFLNGLKEEVRAELRLHQWRSLPEMMDLAQRADERNRALQRTTGVGYGRGNIIKNYPISRTITVEAGRKTYSSSGTPSLGTAKESTNTQPANNLRVKGGSFKKLSNDELNERRKKGLCFNCDEKFGPNHVCKNKRYQIMILEEDENEPGEEEGETEVEEMECQALQLSLNSMTGFTSKRSIIALGEIKGRLVQVLIDCGASHNFLSAKLVKELDLAVEDTPPYHVEVRDGRKIQGRGKCSQLGLQLQGWRIQQDFFIFDLGGAEVVLGMEWLASLGDIRANFQELTLMIPRRGGTMVLKGDPSLSRTAASFRSIMKAIHEDGLGFFLTCAEVFEDHQQREEVPPRVSHMLEEFLEVFQEPQGPGAQSCYCLERRSHDTELETLQVPSLSKNEMEKMINDMLLAGIIRPSTSPYSSPVILVKKKDGGWRFCVDYRALNKITVPNKFPIPIIDELLDELGTATIFSKLDLKSGRDEEEHEVHLRSVLRVLREANLVVNKKKCSFAQGELEYLGHVISAEGVSADPKKLEVMASWPQPKDIKGLRGFLGLTGYYRRFVENYGKIAKPLTQLLKKDSFQWSPDAQGAIEKLKEAMTKLPILAVPEFSKSFIVETDASSRGLGAVLLQASRLCHLLSKSNITAKLPLPVRPSLLHSPSVSISLSVSLRSLFAAASDHLPVAFLSQSLSERGQQKSVYERELMAIVMAVQKWRHYLLGRHFIIHTDQRSLRFLNEQRLQGEEQFKWTSKLMGFDFEIKYKPGCENGMADALSRRMTYATISAVQVGELEDWA. 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03388 1142 Gene3D - 801 827 IPR043128 -
Seca12g03388 1142 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 738 800 - -
Seca12g03388 1142 MobiDBLite consensus disorder prediction 426 454 - -
Seca12g03388 1142 FunFam Transposon Tf2-6 polyprotein-like Protein 880 968 - -
Seca12g03388 1142 SUPERFAMILY DNA/RNA polymerases 746 1115 IPR043502 -
Seca12g03388 1142 SUPERFAMILY Acid proteases 536 632 IPR021109 -
Seca12g03388 1142 CDD retropepsin_like 541 629 - -
Seca12g03388 1142 Pfam GRAS domain family 56 127 IPR005202 -
Seca12g03388 1142 Pfam Ty3 transposon capsid-like protein 256 387 IPR045358 -
Seca12g03388 1142 MobiDBLite consensus disorder prediction 426 451 - -
Seca12g03388 1142 Gene3D Acid Proteases 519 651 IPR021109 -
Seca12g03388 1142 CDD RNase_HI_RT_Ty3 963 1124 - -
Seca12g03388 1142 Gene3D - 828 875 IPR043128 -
Seca12g03388 1142 Gene3D - 880 972 IPR043128 -
Seca12g03388 1142 Pfam Retroviral aspartyl protease 543 630 - -
Seca12g03388 1142 PANTHER ENZYMATIC POLYPROTEIN-RELATED 725 1131 - -
Seca12g03388 1142 Pfam RNase H-like domain found in reverse transcriptase 958 1103 IPR041373 -
Seca12g03388 1142 Coils Coil 165 185 - -
Seca12g03388 1142 CDD RT_LTR 760 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03388 Seca-Chr12 72455252 72462895 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca12g03388 RT_RNaseH 2.9e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03388 - - sot:102595311 784.252