Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03377 ATGTGTTGCTTTTGTTTCTTCTTTCCACATTGCAACTTTCTGTTCCCAATTCAATATTCTGAGGTGCAGGTAAGTGTCCCATGCAGCAGTTTGTCAACTGTGGTGACAGTCAGATGTGGCCATTGCACAAGCCTCCTCTCTGTCAATATGATGAAAGCTTCCTTTATCCCTTTCCACCTTTTAGCTTCCCTTAGTCATTTTGAGCCAAAAGAGGGTAGTTCAGAAGAGGATGCAAACATGACTTTGAACAGCCATAATGCAACCATGATGACCTATTCTGATTTTGAGGAAGAGAACGTTATTCAAATGACCAATGTGGTGAATAAATCCCCAGAGAAGAGACAGCGAACACCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTCAAAACCCAGACATGACCCACAAGGAAGCTTTCAGTACAGCTGCAAAAAATTGGGCCTATTTCCCCCCATCTCAGTGTAAAGGAGACCAAGACAGCTGTAGCCACACAGAGCAAGTTGAGGATTTGGACTCCCATGTAAAGCCTCATGATGCTGAGGTCAATGAAGAAGGCCAAGGTTTCCGTGGAAGAAAGGTTCCAAGGAATTCCATCTTGGCAAGGACACCGTTTCAGTGA 636 0.4371 MCCFCFFFPHCNFLFPIQYSEVQVSVPCSSLSTVVTVRCGHCTSLLSVNMMKASFIPFHLLASLSHFEPKEGSSEEDANMTLNSHNATMMTYSDFEEENVIQMTNVVNKSPEKRQRTPSAYNCFIKEEIKRLKAQNPDMTHKEAFSTAAKNWAYFPPSQCKGDQDSCSHTEQVEDLDSHVKPHDAEVNEEGQGFRGRKVPRNSILARTPFQ. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03377 211 SUPERFAMILY HMG-box 105 159 IPR036910 -
Seca12g03377 211 PANTHER PROTEIN YABBY 6-RELATED 22 172 IPR006780 GO:0007275
Seca12g03377 211 MobiDBLite consensus disorder prediction 167 196 - -
Seca12g03377 211 CDD HMG-box_SF 116 152 - -
Seca12g03377 211 Gene3D High mobility group box domain 106 172 IPR036910 -
Seca12g03377 211 FunFam Axial regulator YABBY 4 103 171 - -
Seca12g03377 211 Pfam YABBY protein 10 158 IPR006780 GO:0007275
Seca12g03377 211 MobiDBLite consensus disorder prediction 163 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03377 Seca-Chr12 72380536 72383422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03377 13 211 C2C2-YABBY Transcription Factor Family AT1G23420 52.703 3.78e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca12g03377 YABBY 1.3e-50 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03377 K25796 - gmx:100779415 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03377 12 72380536 72383422 Seca12g03377 12 72380536 72383422 ECH
Seca12g03377 12 72380536 72383422 Seca12g03377 12 72380536 72383422 PCT