Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03369 ATGGCACAAGATGAAATCAAGACTCCTGCAGTGGTACAAGATGAAATCAACAACACTTCAATGTCACAAGATACTTCTGGTACTGATTCGCATCATAGACATCATGGTCTCTTAAAAGATCAAGTTCGCTTGGTTAAAAGGAAAGACTCTGATCGCAGTGAGGTTGCTCCAATCCAAGACCAATTATCATTTGAGAATGGTTTTTTCATAGTAATCCATGCATGCGAACTGTTGGTCCAAAAGAATGATGGAATGATATTGGTAGGGGTGGCAGGTCCTTCAGGGGCTGGGAAGTCCGTGTTTACAGAAAAGATACTCAACTTTATGCCCAGCATTGCAGTCATTTCAATGGACAATTACAATGATTCTAGTCGAATTGTTGATGGAAACTTTGATGATCCACGCTTAACAGACTATGAAACGTTGCTCCGAAATGTACATGATTTAAAGGAAGGAAATCCAGTGCAAGTTCCTATATATGACTTCAAATCCAGTTCACGTACAGGATACAGGACGGTCGAAGTGCCAAGCTCTCGCATTGTGATTATAGAGGGCACATATGCCTTAAGTGAGAGGTTGCGACCTCTATTGGACCTTCGAGTATCTGTAACAGGTGGCATTCACTTTGACCTTGTTAAACGAGTTATACGTGATATACAACGTGCTGGTAAAGAACCTGAAGAAATTATTCATCAAATATCTGAAACGGTATATCCAATGTATAAGGCTTACATTGAGCCAGATCTCCAGACAGCACATATAAAAATCATCAACAAATTCAATCCATTTAATGGATTCCAAAGCCCTACTTACATATTAAAGTCAGCAAGGAAAGTGACAGTGGATCAAATTAAAGCTGTTCTTTCTGAAGATTTTGAGGAAACAACTGAGCAGACTTATGACATATATCTTCTACCACCTGGTGAAGATCCAGAAAGCTGTCAATCATATTTAAGGATGAGAAATAAGGATGGGAAATACAGTCTCATGTTCGAGGAGTGGGTGACAGATAATCCATTTGTCATATCACCAAGAATTACATTTCCGGTTAGTGTGCGCCTCCTTGGTGGACTAATGGCTCTAGGATACACAATAGCAACTATCCTCAAAAGAAACAGCCATGTCTTATCAGATGATAGGGTTTGTGTGAAACTAGATTGGCTTGAGAAACTTAATCGACATTATGTTCAGGTACAGGGAAGAGATCGCTTAGTTGTAATGTACTTAGCACAGCAGATTGGCTTGGAGGGTTCCTACATTCCTCGTACCTACATTGAGCAGATTAAACTTGAAAAGCTTGTAAATGAGGCTATGGCCATGCCAGATGATTTAAGGATGAAGCTCAGCCTAGATGAGAATTTGATCTCAAGCAGCCACCAAGAAGCACGATATAGAGCCTCTACTGATGGGGTTCCCATGAGACATAAGCGTGTGAGGAGTGATATATATCAGTCATGTACAAATCCAGAGGACAATAATCAAAACCAAGTAACTGGATATGATTCCAACAATCGAGGGCTTAATGAAAGAATTAAATCAGATTCTGCCACAAAACTGGCAAATCTGGGAGTTATCACTCAGCTTTCAGAACAAATTTCTTCCCTAAATGATAGAATGGATGAGTTTACAAATAGACTTGAAGAGCTGAACTCCAAGTTAACAACTATCAAGAAAAATTGTCCAAGCCAACACAATATGGCCACGCAAGTTGAGTGCTGCAATGGTTCTGCTCCCACCTCTTACTTCATCACTAGTTTAAGTAATGGTTCCCTGACTGGATCTATAATGCCAAATTCCTCGTCCCCATCACATTTAGCTAACGAGTCACCTTTAATAGACGAGATATTAGGTATTGCAAGGGGTCAGCATCAGATCATGCATCAGTTGGACAACCTGAATAATCTTCTCTGTGGAAACTCGGGAGAGAAACCTCATCAAACAAGAACCAACAGGAAAAGTGTAGTTACTTATTCAGATTCCCCTGGACCTCATGTAATGGTGGCAGTGGCTATTGGTTGTTTGGGCATCTTCTTGATGAAGGGTTTGTTAACCGATAATTGA 2061 0.4027 MAQDEIKTPAVVQDEINNTSMSQDTSGTDSHHRHHGLLKDQVRLVKRKDSDRSEVAPIQDQLSFENGFFIVIHACELLVQKNDGMILVGVAGPSGAGKSVFTEKILNFMPSIAVISMDNYNDSSRIVDGNFDDPRLTDYETLLRNVHDLKEGNPVQVPIYDFKSSSRTGYRTVEVPSSRIVIIEGTYALSERLRPLLDLRVSVTGGIHFDLVKRVIRDIQRAGKEPEEIIHQISETVYPMYKAYIEPDLQTAHIKIINKFNPFNGFQSPTYILKSARKVTVDQIKAVLSEDFEETTEQTYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFPVSVRLLGGLMALGYTIATILKRNSHVLSDDRVCVKLDWLEKLNRHYVQVQGRDRLVVMYLAQQIGLEGSYIPRTYIEQIKLEKLVNEAMAMPDDLRMKLSLDENLISSSHQEARYRASTDGVPMRHKRVRSDIYQSCTNPEDNNQNQVTGYDSNNRGLNERIKSDSATKLANLGVITQLSEQISSLNDRMDEFTNRLEELNSKLTTIKKNCPSQHNMATQVECCNGSAPTSYFITSLSNGSLTGSIMPNSSSPSHLANESPLIDEILGIARGQHQIMHQLDNLNNLLCGNSGEKPHQTRTNRKSVVTYSDSPGPHVMVAVAIGCLGIFLMKGLLTDN. 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03369 686 PRINTS Uridine kinase signature 208 218 - -
Seca12g03369 686 PRINTS Uridine kinase signature 152 167 - -
Seca12g03369 686 PRINTS Uridine kinase signature 244 257 - -
Seca12g03369 686 PRINTS Uridine kinase signature 85 102 - -
Seca12g03369 686 MobiDBLite consensus disorder prediction 1 39 - -
Seca12g03369 686 PANTHER URIDINE KINASE 32 441 - -
Seca12g03369 686 Gene3D - 85 283 IPR027417 -
Seca12g03369 686 Coils Coil 525 559 - -
Seca12g03369 686 CDD UMPK_like 87 259 - -
Seca12g03369 686 MobiDBLite consensus disorder prediction 12 26 - -
Seca12g03369 686 SUPERFAMILY CYTH-like phosphatases 280 427 IPR033469 -
Seca12g03369 686 Pfam CYTH domain 288 424 IPR023577 -
Seca12g03369 686 ProSiteProfiles CYTH domain profile. 272 430 IPR023577 -
Seca12g03369 686 Pfam Phosphoribulokinase / Uridine kinase family 88 256 IPR006083 GO:0005524|GO:0016301
Seca12g03369 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 256 IPR027417 -
Seca12g03369 686 MobiDBLite consensus disorder prediction 485 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03369 Seca-Chr12 71956355 71965852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03369 86 256 PRT Gene Family AT5G40870 27.222 1.27e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03369 K00876 - gmx:100781286 1027.7