Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03368 ATGCAAGATGTAAAATGTAACATGACACGAGAGCTTCAATTAATTGCTGTCATGTCAGCACCGTCACCGTCTCCGGCGTCATCCGCCGCCGTGCCACCACCCAGTCCACCGCCACAGCTCTCTTCCCCTGCACCTGACTGTTCAGCTTCACCACTACCATCTCTGTTCCCACCTCTCTTGTCACCTTCAACACCACCACCACTGCCAACTCCTGCTTCTCCTTCACTGCCACCACAGTCTCCGGTGCCGGAAAGTTCACCACCGGTATCACTGCCCCCTGAAAATTCACCCTCAGATGTGCCCCCTCTGAGGTCTTCTCCACCACCTGAATCAATCCCTCCTCAAAATTCCCCTCCTTCTCCTACACCTCTGAGTAGTGCACCACCACCACCTCCTCCTAGGATAGGTCCTCCTTATTCTCAATATATCCCATCACCCACATTTAGATTGGCTCCACCACCTCCATCATCACAACATGCATCAGAAAATTCAAGCCCTGGAGGTGGTGGTGGCATTGGTTCTGGGGGTGCAGTAACTATTGGTGTAGTGGCTGGAGTTCTATTGCTTGGCTTCTTTGGCATTGCTATCTGGTGCCTGAGCAGGCAAAAGAAAAGGGTGTCTGAGAATGGTAGTTTTGTCTTGCCATCCTCTCATTTCCCATCACCTGAATCAGATTTGTCCCTTTTGAAGACACATTCTTCTGCACCTCTTATACAAAGAGGTTCTGGCAGTGATAATGTGTATAAACCATCAGGACCAGGCAACTCAAGGTCATGGTTTGCATATGATGAACTAATCAAGGCCACAAATGATTTTTCAACTGAAAACCTTTTGGGTGAGGGTGGATTTGGTTGTGTATATAAAGGATACCTTCCAGTTGGGAGAGAGGTAGCAGTCAAACAGTTGAAAATTGATGGAGGTCAGGGTGAGAGAGAGTTCAAATCTGAAGTGGAAATTATTAGTCGCATCCATCATCGTCATTTGGTTTCCTTGGTGGGATACTGCATTTCAGATAATAGAAGATTGCTTGTCTATGACTACATCCCCAACAATACCCTTTATTTTCATCTTCACGGTAAACTGAAAATGAACTTTGCAGGGGAAGATAGGCCAGTTTTAGACTGGGCAAACCGTGTTAAAATTGCTGCTGGTGCTGCTAGAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGGGATATAAAGTCATCAAATATTCTTTTAGATTACAACTTTGAAGCTAGAGTCTCAGATTTTGGGCTGGCCAAATCAGCTCTTGATGCAAATACACATGTAACCACACGTGTAGTGGGGACTTTTGGATATGTTGCCCCAGAGTATGTATCAAGTGGCAAATTGACCGAGAAGTCAGATGTATATTCTTTTGGAGTCATGCTTTTGGAGCTCATTACTGGACGGAAGCCAGTAGATATATCTCAACCAGTTGGAGAAGAGAGTCTAATAGAATGGGCTCGTCCTCTGCTAAGTCATGCACTTGATAATGAGGAATTTGAGAGTTTGATAGATCCAAAGCTAGGAAAGAACTATATTGATAGTGAAATAATTTGCATGATTGAAGTTGCTGCTGCTTGTGTGCAACATTCAGCTACCAAAAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGTTTATCTACTTCAGACTTAACAAATGGAATGAGATTTGGGGAAAGTGAGGCGTTTGATTTGGCACAGCAATCCGCAGAAATAAGATTATTTCGTAGGATGGCATTTGGTTGTCAAGATTATAGCTCAGATATTTTTAGCCAGATTAGTTTGAATACCTAA 1824 0.443 MQDVKCNMTRELQLIAVMSAPSPSPASSAAVPPPSPPPQLSSPAPDCSASPLPSLFPPLLSPSTPPPLPTPASPSLPPQSPVPESSPPVSLPPENSPSDVPPLRSSPPPESIPPQNSPPSPTPLSSAPPPPPPRIGPPYSQYIPSPTFRLAPPPPSSQHASENSSPGGGGGIGSGGAVTIGVVAGVLLLGFFGIAIWCLSRQKKRVSENGSFVLPSSHFPSPESDLSLLKTHSSAPLIQRGSGSDNVYKPSGPGNSRSWFAYDELIKATNDFSTENLLGEGGFGCVYKGYLPVGREVAVKQLKIDGGQGEREFKSEVEIISRIHHRHLVSLVGYCISDNRRLLVYDYIPNNTLYFHLHGKLKMNFAGEDRPVLDWANRVKIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDYNFEARVSDFGLAKSALDANTHVTTRVVGTFGYVAPEYVSSGKLTEKSDVYSFGVMLLELITGRKPVDISQPVGEESLIEWARPLLSHALDNEEFESLIDPKLGKNYIDSEIICMIEVAAACVQHSATKRPRMGQVVRAFDSLSTSDLTNGMRFGESEAFDLAQQSAEIRLFRRMAFGCQDYSSDIFSQISLNT. 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03368 607 SMART serkin_6 272 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03368 607 ProSitePatterns Protein kinases ATP-binding region signature. 278 300 IPR017441 GO:0005524
Seca12g03368 607 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 186 588 IPR047117 -
Seca12g03368 607 MobiDBLite consensus disorder prediction 17 170 - -
Seca12g03368 607 FunFam proline-rich receptor-like protein kinase PERK8 348 567 - -
Seca12g03368 607 ProSiteProfiles Protein kinase domain profile. 272 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03368 607 MobiDBLite consensus disorder prediction 26 140 - -
Seca12g03368 607 Pfam Protein tyrosine and serine/threonine kinase 274 552 IPR001245 GO:0004672|GO:0006468
Seca12g03368 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Seca12g03368 607 MobiDBLite consensus disorder prediction 154 168 - -
Seca12g03368 607 Gene3D Transferase(Phosphotransferase) domain 1 349 571 - -
Seca12g03368 607 Gene3D Phosphorylase Kinase; domain 1 241 347 - -
Seca12g03368 607 PRINTS Proline rich extensin signature 51 67 - -
Seca12g03368 607 PRINTS Proline rich extensin signature 25 46 - -
Seca12g03368 607 PRINTS Proline rich extensin signature 70 87 - -
Seca12g03368 607 PRINTS Proline rich extensin signature 88 113 - -
Seca12g03368 607 FunFam Proline-rich receptor-like protein kinase PERK8 244 347 - -
Seca12g03368 607 SUPERFAMILY Protein kinase-like (PK-like) 249 551 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03368 Seca-Chr12 71920323 71925661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03368 152 602 Trihelix Transcription Factor Family AT5G38560 62.716 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca12g03368 PK_Tyr_Ser-Thr 3.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03368 - - vun:114173712 693.73