Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03364 ATGTATGAAGAAAGTGGTTGCTTTGATCCCAATGCAATGATGGGAACAACAACAGGCCCATCATCAGAAGACTGCTTCTCCCAAATCGTTTCAGAGTCAGACCAACCACTTCAGGCACCTGCCACGGAGACCCACAACAGCTTTTCAGAGAATGTGTGTCTTTCTGTGGAAAACTTCTCCTACCCATATTCTTGTGGTGAAGATGCTATTACTGCTACTTCTTCTACCCTCACAAATAGAGTTGCTGCTTCTGTTGCCACTGGAATGGAAATCACTGCACATCCCAACCAAATGGGTTTTCACATGGAAAATCCATACAATCATACCAATAACTTCAATACCAATTTGGTGGAAGAGGTCAATAACAATAACAATTGGGATACTTCAAAACTGCATAAGGTTTACCATAGTCAGCAACTTCCTTATCATCAACAAGATCAGCAGGATCAGCAATTTCCTTATCCCACAACAAAACCAGATCTTCTTAACCTTCTCCACTTGCCTAGAAGCCCACCTTCCCCATTTGGGAACTCCTCTCTATCTTTTGAAAACCCAAACCACAACACCACCAATCTTTCAAGACCCTCAAGCCATGCCACCTGGATTGGTAACTGCCCTATGGGGGCAGAAAGCACAAATGTTTCCTCTGTTACCTATGACCCTTTGCTGCATTTGAACTTGCAAGCACCACCACAAGGTGCTGCAATTCATCCTCTACCCCATGGCTACACCATGGCTTCAAGAAATGATTTTGTCTTTGGTGAAGGGGATGACATAGAAGGTAGTGGGGTTGCTTACCAAGATGGAGATGGGAGAGATTTTGGTAATGGAGTTTTAGAGTTCACCCAAGATGTGACTTATGTTGGTAAAAAGAGAGGAGGGAAAAGGGTCAAGCAATTTACCAGTACAAGTGAGAAACAAAGGAGAGTGGATTTGAGTAGCAAGTTTGATGCCTTAAAAGAACTCATCCCAAACCCTTCAAGGGTAAGTGATAGAGCATCAGTGGTGGGAGATGCTATTGACTACATCAAAGAGCTTCTAAGGACAGTGAACGAGCTCAAATTATTGGCAGAGAAGAAAAGGCACGAGAAACAAAGGATGAAGAGGCACAAGGTTGAAGAAGGTGGCTTGGAAGAAGACTACAACTTGAAGCTGGTTGGAATTGGCAACCCAGATGAACAATCCTACAATGAAAGCATTAGAAGTTCATGGATCCAAAGGAAATCTAAAGACACTGAGGTTGATGTACGCATTATTGACAACGAGGTAACAATAAAGCTTGTTCAAAGGAAGAAGATCAATTGCTTGGTGTATGCTTCACAAGTTCTGAATGAACTTAAGCTGGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTTTATGCTCAATAGCAAGATATGTGAAGGTTCTTCAGTTTATGCAAGTGCCATAGCCAACAAACTTATTGAGGTAATGGACAGAAGTTTGGCAGCAGCATGA 1491 0.4279 MYEESGCFDPNAMMGTTTGPSSEDCFSQIVSESDQPLQAPATETHNSFSENVCLSVENFSYPYSCGEDAITATSSTLTNRVAASVATGMEITAHPNQMGFHMENPYNHTNNFNTNLVEEVNNNNNWDTSKLHKVYHSQQLPYHQQDQQDQQFPYPTTKPDLLNLLHLPRSPPSPFGNSSLSFENPNHNTTNLSRPSSHATWIGNCPMGAESTNVSSVTYDPLLHLNLQAPPQGAAIHPLPHGYTMASRNDFVFGEGDDIEGSGVAYQDGDGRDFGNGVLEFTQDVTYVGKKRGGKRVKQFTSTSEKQRRVDLSSKFDALKELIPNPSRVSDRASVVGDAIDYIKELLRTVNELKLLAEKKRHEKQRMKRHKVEEGGLEEDYNLKLVGIGNPDEQSYNESIRSSWIQRKSKDTEVDVRIIDNEVTIKLVQRKKINCLVYASQVLNELKLDLQHVAGGHIGDFCSFMLNSKICEGSSVYASAIANKLIEVMDRSLAAA. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03364 496 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 346 IPR011598 GO:0046983
Seca12g03364 496 Coils Coil 343 373 - -
Seca12g03364 496 PANTHER TRANSCRIPTION FACTOR BHLH91 1 495 IPR045895 GO:0006355|GO:0048658
Seca12g03364 496 Pfam Helix-loop-helix DNA-binding domain 303 346 IPR011598 GO:0046983
Seca12g03364 496 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 360 IPR036638 GO:0046983
Seca12g03364 496 CDD bHLH_AtMYC1_like 301 362 IPR045896 -
Seca12g03364 496 Gene3D - 294 374 IPR036638 GO:0046983
Seca12g03364 496 SMART finulus 302 352 IPR011598 GO:0046983
Seca12g03364 496 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03364 Seca-Chr12 71891062 71893172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03364 1 496 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 34.165 2.62e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g03364 HLH 3.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03364 - - vra:106767981 455.677