Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03354 ATGAGGGGTGGTAGGAAAAGGAAGCTGCATTTAAGCAAGATCTACTCATTCACATGCTGCAAGGCATCTTTCAAAGGAGAACATTCACAGATTGGAGGTAGAGGTTATTCCAGGGTGGTCTTCTGCAATGAGCCAGATAACTTTGAGGCTGGGATTAGGAATTATGCAGATAATTCTGTCAGATCTACAAAATATACTGCTGCTACTTTCCTTCCTAAATCACTGTTTGAGCAGTTTAGGAGGGTGGCCAACTTCTATTTTTTGGTTACTGGTATTTTGGCATTCACAAAACTTGCTCCATATAAAGCTGTCAGTGCTATCCTTCCCCTGATTATTGTTATTGGGGCAACTATTGTGAAAGAAGGTATTGAAGACTGGCGTAGGAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGCTAAAGTGCATAAAGTTGATGGCACTTTTGAATATACTGCATGGAAAAATCTGAGGGTGGGGAATATAGTGAAGGTAGAGAAGGATGAGTTCTTCCCAGCAGATCTCCTATTGCTTTCATCCAGTTATGAGGATGCAGTCTGCTATGCTGAGACCACGAACTTGGATGGGGAGACAAATTTAAAGTTAAAACAAGGTTTGGAGGTAACTTCATCCTTAAATGAGGATCTCAACTTCCGAAATTTTAGAGCTACAGTCAAATGTGAAGACCCAAATGCAAGTTTATACTCATTTGTTGGGAGCATGGAGTTTGAAGAGCAAAAATATGCCCTTTCTCCTCAACAACTTCTTCTACGAGACTCAAAACTTCGTAACACAGACTACATTTTTGGAGCTGTCATCTTCACTGGTCATGACACTAAGGTTATTCAAAATTCTACTGACCCACCTTCAAAGAGAAGCAGAATTGAGAAAAAGATGGATAGAATCATCTACTTCTTGTTTTGTATTTTATTTCTAATGGCATTTGTTGGATCTATCTTCTTTGGCGTTTCAACTAAAGATGACTTCGAAAATGGTTTGGTGAAAAGATGGTATTTAAGACCAGATGATTCTACAATCTTCTATGATCCGAAAAGATCAGCTGCTGCTGCTATGTTTCATTGTTTGACAGCCTTAATGTTATATGGCTTCTTTATTCCTATCTCTTTGTATGTGTCAATAGAAATTGTCAAAGTCCTTCAAAGCATTTTCATCAATCAAGATATCTATATGTACTACAAGGAAGCAGACAAACCAGCCCATGCTCGCACTTCAAACTTGAATGAGGAGCTTGGCCAAGTTGACACAATACTTTCTGATAAAACTGGAACTCTGACTTGCAACTCAATGGAGTTCATCAAATGTTCTATCGCTGGGGTAGCTTATGGGCGTGGTGTTACAGAGGTTGAGAAGACCATGCATAGAAGAAAAGGCTCACCATTTGTTCATGAGCATGATATATCAGCAGAAGATGACATCAGGGATTCTCTTGATAAAAAAGCACTAATTAAAGGTTTTAACTTCACTGATGAAAGAATAACAAATGGAAATTGGGTTAATGAGCCTCATGCAGATGTTATCCAGAAGTTTTTTCGCCTATTAGCAGTATGTCATACAGCCATACCAGAAGTGGATAATGACACAGGAAATGTCTCATATGAGGCTGAATCCCCAGATGAAGCAGCATTTGTGATTGCCGCGAGAGAACTTGGTTTTGAATTCTGCAAAAGGGCTCAGACTAGTTTATCAACATGTGAGTTGGATCCAATATCTGGCAAGAAAGTTGAAAGGATGTACAAGCTTCTCAATGTATTAGAATTCAATAGCTCAAGGAAGCGAATGTCAGTGATAGTGGAAGATGAAGAAGGGAAAATTTTGCTACTCTGCAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAGAATGGGAGGGAGTTTGAAGAGAAAACCATGGAGCATGTGCATGAGTATGCTGATGCAGGTCTTAGAACCCTTATACTGGCCTATCGTGAGCTTGATGCAGAAGAATACAAGGAGTTTGATAATAGATTCTCTAAGGCCAAGAATTTAGTTAGTGCAAATCAGGAAACACTGATTGAGGAGGTATCAGATAGTATTGAGAAAAATCTAATCCTTCTAGGTGCCACTGCTGTAGAAGACAAGCTCCAAAGTGGGGTTCCTGATTGCATTGACAAGCTTGCACAAGCAGGAATTAAGATTTGGGTTTTGACTGGGGATAAAATGGAGACTGCAATCAATGTTGGATTTGCTTGTAGCTTGCTCAGACAAGGAATGAAGCAAATTATAATTCATTTGGATAGTCAAGAAATTCAAGCACAAGAGAAGGATGGGGACAAGATAGCTATTGCCAAGGCATCAAGGCAAAGTGTCCTCCTTCAGATATCTGAAGGTGCTGCACAGCTTGCTGCATACAGAGGGAGCTCTAAGCAGGCATTTGCTCTGATTGTTGATGGCAAATCACTCGCTTATGCACTAGAAGATAATATGAAGAACATGTTTCTGGAGCTTGCAATTCGTTGTGCATCTGTTATTTGCTGTCGCTCATCACCAAAGCAGAAGGCACTGGTAACCAGATTGGTCAAATCTGGGACTAGGAAAACAACATTAGCTATTGGAGATGGAGCTAATGATGTGGGAATGCTTCAAGAAGCAGATATAGGTGTTGGAATAAGTGGTGTGGAAGGAATGCAGACATTTTTTTCCCTCCCAATCCCACAGGCTGTTATGTCTAGTGATATTGCAATTGCACAGTTCCGATATTTGGAACGACTACTTTTGGTGCATGGACATTGGTGTTACCGGAGGATCTCATCTATGATATGCTATTTTTTCTACAAGAATGTCACATTTGGTTTTACTCTATTCTTATATGAGGTGTATGCATCATTCTCTGGAGTACCTGCATACAATGACTGGTTTTTGTCTCTCTATAATGTCTTCTTTTCGTCACTTCCCGTGATTGCTCTTGGGGTATTTGACCAGGATGTATCTGCTCGGTACTGCTTGAAGTTTCCTTTGTTATATCAAGAAGGAGTACAGAATGTCCTTTTCAGCTGGCGCCGAATTCTCAGCTGGATGCTTAATGGATTTATTAGTGCCTTAATAATTTTCTTCTTCTGCACAAAAGCAATAGAGCTCCAAGCCTTTGATGAGGAAGGTAGAACAGCTGGGAGAGATATACTGGGAGCAACCATGTATACTTGTATAGTTTGGGTTGTAAACTTGCAGATGGCACTAGCTATAAGTTACTTCACCATGATCCAACATTTTTTCATCTGGGGTTCCATTGCTTTCTGGTACATTTTTCTCCTGATATATGGAGCAATGCCTCCAAATCTATCTGAAAATGCTTACAAAGTCTTCATTGAAACTCTTGCTCCTTCCCCTTCATATTGGATTGTCACATTCTTTGTGGTGATCACAACCCTTGTACCATACTTCTCATATTCAGCAATAAAGATGAGGTTCTTTCCCATGTATCATGAAATGGTACAGTGGATAAGGTATGAGGGGAAGACTAAGGATCCTGAGTTCTGTGAAATGGTGCAGCAGAGGTCATTGCAGCTTATGACTGTTGGTTCATCAGCACGCTTAGCAGCCAAGGCAAACCAATTTAGAGAAAGAAATATTAATCTTAGATAA 3624 0.4001 MRGGRKRKLHLSKIYSFTCCKASFKGEHSQIGGRGYSRVVFCNEPDNFEAGIRNYADNSVRSTKYTAATFLPKSLFEQFRRVANFYFLVTGILAFTKLAPYKAVSAILPLIIVIGATIVKEGIEDWRRKKQDIEVNNRRAKVHKVDGTFEYTAWKNLRVGNIVKVEKDEFFPADLLLLSSSYEDAVCYAETTNLDGETNLKLKQGLEVTSSLNEDLNFRNFRATVKCEDPNASLYSFVGSMEFEEQKYALSPQQLLLRDSKLRNTDYIFGAVIFTGHDTKVIQNSTDPPSKRSRIEKKMDRIIYFLFCILFLMAFVGSIFFGVSTKDDFENGLVKRWYLRPDDSTIFYDPKRSAAAAMFHCLTALMLYGFFIPISLYVSIEIVKVLQSIFINQDIYMYYKEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVEKTMHRRKGSPFVHEHDISAEDDIRDSLDKKALIKGFNFTDERITNGNWVNEPHADVIQKFFRLLAVCHTAIPEVDNDTGNVSYEAESPDEAAFVIAARELGFEFCKRAQTSLSTCELDPISGKKVERMYKLLNVLEFNSSRKRMSVIVEDEEGKILLLCKGADSVMFERLAKNGREFEEKTMEHVHEYADAGLRTLILAYRELDAEEYKEFDNRFSKAKNLVSANQETLIEEVSDSIEKNLILLGATAVEDKLQSGVPDCIDKLAQAGIKIWVLTGDKMETAINVGFACSLLRQGMKQIIIHLDSQEIQAQEKDGDKIAIAKASRQSVLLQISEGAAQLAAYRGSSKQAFALIVDGKSLAYALEDNMKNMFLELAIRCASVICCRSSPKQKALVTRLVKSGTRKTTLAIGDGANDVGMLQEADIGVGISGVEGMQTFFSLPIPQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNVTFGFTLFLYEVYASFSGVPAYNDWFLSLYNVFFSSLPVIALGVFDQDVSARYCLKFPLLYQEGVQNVLFSWRRILSWMLNGFISALIIFFFCTKAIELQAFDEEGRTAGRDILGATMYTCIVWVVNLQMALAISYFTMIQHFFIWGSIAFWYIFLLIYGAMPPNLSENAYKVFIETLAPSPSYWIVTFFVVITTLVPYFSYSAIKMRFFPMYHEMVQWIRYEGKTKDPEFCEMVQQRSLQLMTVGSSARLAAKANQFRERNINLR. 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03354 1207 Gene3D - 548 700 IPR023299 GO:0000166
Seca12g03354 1207 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 39 1164 - -
Seca12g03354 1207 NCBIfam phospholipid-translocating P-type ATPase 55 1159 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca12g03354 1207 SFLD C1.7: P-type atpase like 406 925 - -
Seca12g03354 1207 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Seca12g03354 1207 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 431 702 IPR023299 GO:0000166
Seca12g03354 1207 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 1152 IPR023298 -
Seca12g03354 1207 CDD P-type_ATPase_APLT_Dnf-like 57 1034 - -
Seca12g03354 1207 Pfam Cation transport ATPase (P-type) 531 626 - -
Seca12g03354 1207 Gene3D - 701 914 IPR023214 -
Seca12g03354 1207 FunFam Phospholipid-transporting ATPase 700 914 - -
Seca12g03354 1207 SUPERFAMILY HAD-like 419 929 IPR036412 -
Seca12g03354 1207 Gene3D - 117 286 - -
Seca12g03354 1207 Coils Coil 1189 1207 - -
Seca12g03354 1207 NCBIfam HAD-IC family P-type ATPase 836 957 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g03354 1207 FunFam Phospholipid-transporting ATPase 116 286 - -
Seca12g03354 1207 FunFam Phospholipid-transporting ATPase 542 700 - -
Seca12g03354 1207 SUPERFAMILY Calcium ATPase, transduction domain A 140 283 IPR008250 -
Seca12g03354 1207 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Seca12g03354 1207 PRINTS P-type cation-transporting ATPase superfamily signature 865 884 - -
Seca12g03354 1207 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Seca12g03354 1207 Pfam Phospholipid-translocating P-type ATPase C-terminal 902 1152 IPR032630 -
Seca12g03354 1207 SFLD p-type atpase 406 925 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03354 Seca-Chr12 71549231 71562763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03354 3 1200 Primary Pumps ATPases AT1G68710 73.052 0.0 1883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03354 K01530 - gmx:100781421 2097.78