Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03343 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGGGGGTGGACAGCAGAGGAGGATGAGATCTTAGCCAAATTCATTCAGTCCAACGGGGAAGGTTCATGGAGATCATTGCCCAAGAATGCAGGTATATATATCAATTCATAA 153 0.451 MGRAPCCEKVGLKKGGWTAEEDEILAKFIQSNGEGSWRSLPKNAGIYINS. 51
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03343 50 Pfam Myb-like DNA-binding domain 14 44 IPR001005 -
Seca12g03343 50 SUPERFAMILY Homeodomain-like 8 45 IPR009057 -
Seca12g03343 50 Gene3D - 11 45 - -
Seca12g03343 50 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 46 - -
Seca12g03343 50 ProSiteProfiles Myb-like domain profile. 9 50 IPR001005 -
Seca12g03343 50 CDD SANT 17 45 IPR001005 -
Seca12g03343 50 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 50 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03343 Seca-Chr12 70797079 70797231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03343 1 46 MYB Transcription Factor Family AT5G49330 82.609 2.56e-23 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca12g03343 Myb_DNA-binding 6.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03343 K09422 - gmx:100814275 95.1301