Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03337 ATGGATTCTCTTCTCTCTCTTCAAGCAGCTACTAGTACCATCTCTCACCCACCCCCACCCCCACCCGCGGACATTTCCACCCACAACGCCAGCAGCTCCACTGCTGCTTCAGCCACAGCCACCAACATTGCCCTCGGAGTGCCTCTTTTCTCACTCCCGAACTTGTTGGTTCCAAAGCCAGAACCTTTCGATGAATTCTTCGCGACCCAGGACCCCCAACAACAACCCCATGGTCCAGCTGATGGGTCCGAAGACGATCAAGAACCCGATTTGTATACCCAGTTCTATCGGGTCTCCAAGCTCTTCAATGATGCCCTTGGCGATACCTTTTACTTCGGAGCCCAACACATTGGTGCTCCTCAGAACCCGATTCCAAACACTCTGAACCTCAATTTTCCGGACCCAATCCCGGTCCCGGACCCGGACCCGAAAGCACCGTCCGAAGACATTGACCCGATTGTCGAGGACCAGAATTTGCAGTCCGATGACGGAAATGCGGTTATTTCGGACCAGAGTTCGCGAGCGATCGTTCCTGTGCCGCCTCCGCAGCAATCGGCGGCGGTGGTGGTGAGACGGAGGCAGAGCCGGGTGAAGGAGCTGGTTAGGGTAATGGATCTCGAAGTGAAGGATCAGATGCAACACCGTGAGCTTGTGAGGAGGACGAGGATGGTCTACGATTCCCTGAAAGTGTGGGCGACCATAGAGGAAGAAAAGAGAGCGGCCGCTGAACTCCTCGCCGGGCCGGACGACGCCGACAATCCCTCCCGGGGTCGGCGCATCCGAGGGGACCTGAGGGCTGCAGCAGTGATGAGGCGGTGTGGTTTGTGGCTGAACCGTGATAAGCGGATTGTTGGAGCAATTCCTGGTGTGTTTGTTGGTGATGTGTTTCTTTTCAGGATGGAACTGTGTGTGATTGGTTTGCACGGTCAGATACAGGCTGGCATTGATTATCTTCCTTCAAGCATGAGCGCCAATGGAGAGCCAATTGCTACCAGTGTCATTGTTTCTGGTGGGTATGAGGATGACTTGGATGATGGTGAGGTTATCATCTACACTGGACATGGTGGGCAGGATAGGAATTCATCAAGGCAAATTTGTGATCAGAAGTTGGAGGGAGGAAACCTTGCTTTGGAAAGGAGCATGCATTATGGGATTGAGGTAAGGGTTATTCGAGGAATGAAGTATGAGGGGAGTGCTTCAAGTTCAGGTAAGGTTTATGTTTATGATGGAGTGTATAGGATTGTTGAATGCTGGTTTGATATGGGGAGGTCTGGTTTTGGTGTTTATAAGTATAAGCTTTGTAGGATTGAGGGACAACCTAAGATGGGTAGTGCTATTCTGAAAGAAGCTAGGGAGATTAGAAGAAGTGGATTGGATTTCAAACCTGTGCATTGTCTTTCTATTGATATGTCAAACAAGAGGGAGAATGTTGCTGTTAGGCTTTTTAATGACATAGATGACAATCAGGTTCCTCTTTGTTATGAATATCTTCCCAGGACTACTTTTCCGCCCTTTGTGTTTCATCAGAGTGGGAAAGCTACTGGTTGTGACTGTAAAGATGGTTGTGCTGATGGCTGCTTTTGTGCTATGAAAAATGGGGGTGAGTTTCCTTATAACCTACAAGGGCTTCTTGTGAGAGGAAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGCAGCTGTCCTCCTAATTGTCGTAATCGTGTTACACAAAAGGGGCTGAAAAATAGGTTGGAAGTGTTTAGGTCTAGGCAGACGGGTTGGGGAGTTAGGTCCTTGGATGTCATCCATGCTGGTGCTTTTATCTGTGAGTATACAGGGGTTGTTTTGACTAGGGAACAAGCGCAAATTTTGACAATGAATGGTGACTCATCAATATATCCCAATCGCTTTTCAGAAAAATGGGCAGAATGGGGGGATTTATCTCAGATATATGCTGATTATGTGCGTCCATCATATCCATCAGTCCCTCCTTTAGATTTTTCTTTGGATGTGTCATCAATGAGGAATGTTGCTTGCTATATAAGCCACAGTTCAACTCCAAATGTATTAGTTCAGTTTGTTCTGTACGATCACAACAACTTGATGTTCCCTCATGTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTCAGCCTTGATTATGGTGTAGCTGATGAGTGGACAGGCAAGCTCTCTATATGCAACTGA 2196 0.4795 MDSLLSLQAATSTISHPPPPPPADISTHNASSSTAASATATNIALGVPLFSLPNLLVPKPEPFDEFFATQDPQQQPHGPADGSEDDQEPDLYTQFYRVSKLFNDALGDTFYFGAQHIGAPQNPIPNTLNLNFPDPIPVPDPDPKAPSEDIDPIVEDQNLQSDDGNAVISDQSSRAIVPVPPPQQSAAVVVRRRQSRVKELVRVMDLEVKDQMQHRELVRRTRMVYDSLKVWATIEEEKRAAAELLAGPDDADNPSRGRRIRGDLRAAAVMRRCGLWLNRDKRIVGAIPGVFVGDVFLFRMELCVIGLHGQIQAGIDYLPSSMSANGEPIATSVIVSGGYEDDLDDGEVIIYTGHGGQDRNSSRQICDQKLEGGNLALERSMHYGIEVRVIRGMKYEGSASSSGKVYVYDGVYRIVECWFDMGRSGFGVYKYKLCRIEGQPKMGSAILKEAREIRRSGLDFKPVHCLSIDMSNKRENVAVRLFNDIDDNQVPLCYEYLPRTTFPPFVFHQSGKATGCDCKDGCADGCFCAMKNGGEFPYNLQGLLVRGKPLIFECGPFCSCPPNCRNRVTQKGLKNRLEVFRSRQTGWGVRSLDVIHAGAFICEYTGVVLTREQAQILTMNGDSSIYPNRFSEKWAEWGDLSQIYADYVRPSYPSVPPLDFSLDVSSMRNVACYISHSSTPNVLVQFVLYDHNNLMFPHVMLFAMENIPPMRELSLDYGVADEWTGKLSICN. 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03337 731 SMART preset_2 467 559 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca12g03337 731 ProSiteProfiles SET domain profile. 575 718 IPR001214 GO:0005515
Seca12g03337 731 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 115 731 IPR025794 GO:0016571
Seca12g03337 731 Gene3D SET domain 444 731 IPR046341 -
Seca12g03337 731 MobiDBLite consensus disorder prediction 8 33 - -
Seca12g03337 731 ProSiteProfiles YDG domain profile. 285 435 IPR003105 -
Seca12g03337 731 Pfam SET domain 586 718 IPR001214 GO:0005515
Seca12g03337 731 SUPERFAMILY PUA domain-like 266 448 IPR015947 -
Seca12g03337 731 Gene3D - 282 443 IPR036987 -
Seca12g03337 731 SUPERFAMILY SET domain 460 730 IPR046341 -
Seca12g03337 731 Pfam SAD/SRA domain 284 439 IPR003105 -
Seca12g03337 731 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 267 452 - -
Seca12g03337 731 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 139 719 - -
Seca12g03337 731 SMART G9a_1 280 439 IPR003105 -
Seca12g03337 731 SMART set_7 575 724 IPR001214 GO:0005515
Seca12g03337 731 MobiDBLite consensus disorder prediction 125 150 - -
Seca12g03337 731 Pfam Pre-SET motif 471 567 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca12g03337 731 MobiDBLite consensus disorder prediction 61 88 - -
Seca12g03337 731 ProSiteProfiles Pre-SET domain profile. 514 572 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03337 Seca-Chr12 70737750 70746802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03337 150 720 Su(var)3-9 homologs AT5G04940 37.158 1.73e-106 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca12g03337 SAD_SRA 1.8e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03337 K11420 - gmx:100785015 929.087