Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03334 ATGAGCAATGATGTTGATTCTAGTGATAGTGGAGATAGTGGTAGTGAGCCTACTACTAATAATGAAACAAATGAGCCATTAATGATGGATGTTGGAGGTGAGGTCTTTAAGAGGATAACATATTTGATTGCTGATGATATACTAGCATTACAGTTTGGTTCTCAAAAGGAAGCATATGTATTTTACAATGAATATGCTAAAGCTCATGGATTTGTTGTAAGGAAAGACGAGGTAAAGAAGGATGTTAGGGGGAACATTGTGATGCGGCAATTTGTATGCAATAGGGAAGGACTAAGAAATAAAAAACATTTAATGAGATTAGATAGAAAAAGGGAGCATAGAGCACCTACCGGCACAAATTGTGTAGCAAAGCTTCGAATTCGCTTTAATCGAAAGAAATCCAAATGGAGAATGTTCTTCTTTGTGGAGGCCCATAACCATGAGTTAACCCCTTCTAGGTATGTGCATTTAAACTCTGCTTATCGTAAGTTGTCAGATGGAGATAAGGCTCAGGTAGATAACTTACATACACATGGTGTGAGAACATGTCACATTATGGGGTATATGTTGGCTCAGAAGGGGGGATACAGTAATCTTGGTTTTTCAAGAAAGGATATGTACAACTATATTGACAGTAAGGCTCGTGGTAAGATAAAGGATGGAGATGCACTTACTGCCCTTAGTTATTTGAAAGGTAGGGGGCACATGACCCCACATTGTTTGCAGAACACCATTATTGAATTCATACATAATTTTGAGGAAGCATTGAGGGGATATAGGAACAATGAGTTGAGTGCAGATTTTAAATCACTATTTTCTGAACATGTTATGACTACCTGTTTGCAGAAAATAGAGAGACAGGATTCAAAAATTTACACAATGGAGATGTTTAAAGAAGTTAGGGAGGAAATAAATAAGGTCGGTGCATTAAATATTACTGAACGAACAGCAAACAATGAGAAGTTAAGGTTCAAACTCAGTAGGTATGGCAAACCTGGTCGTGAAATCAATATTTTGTATAATACTGCAGATTCTTCTTTCAATTGTGATTGTCGTCTCTTTGAAAGATGTGGCATTCCATGCTCTCATATTTTTTGTGCAATGAAAAATGAGCATTTGGAATGTATTCCTAGCAGTTTGGTTTTGAAAAGATGGACAAAGACTGCGAAGAGTCATCTCATTTCCTCTTATAGTGTTGGGGAAGTAAGTAATGATGTCTTGGATGCTACTCGTTCATCTACCTTAACTGCATATGCTAATAACTTCATTAAGGTTGCTTATGAGAAGACACGATGCTTCAATGAGATAGTAGATGACATTTTTAACCTTCAGTTGAAGTATGAGAAGAAGGGGGATCCAAGTAGCGCTTGCTGCTCATCAGCAAAGAAAATTAGTTATCCCAGTGTTGTTAAGACTAAAGGTGCTCCGAAAAGGAAAAAGTTTGCCAAGAAAAGGAGTAGACATTTTTCAAATTGA 1476 0.3706 MSNDVDSSDSGDSGSEPTTNNETNEPLMMDVGGEVFKRITYLIADDILALQFGSQKEAYVFYNEYAKAHGFVVRKDEVKKDVRGNIVMRQFVCNREGLRNKKHLMRLDRKREHRAPTGTNCVAKLRIRFNRKKSKWRMFFFVEAHNHELTPSRYVHLNSAYRKLSDGDKAQVDNLHTHGVRTCHIMGYMLAQKGGYSNLGFSRKDMYNYIDSKARGKIKDGDALTALSYLKGRGHMTPHCLQNTIIEFIHNFEEALRGYRNNELSADFKSLFSEHVMTTCLQKIERQDSKIYTMEMFKEVREEINKVGALNITERTANNEKLRFKLSRYGKPGREINILYNTADSSFNCDCRLFERCGIPCSHIFCAMKNEHLECIPSSLVLKRWTKTAKSHLISSYSVGEVSNDVLDATRSSTLTAYANNFIKVAYEKTRCFNEIVDDIFNLQLKYEKKGDPSSACCSSAKKISYPSVVKTKGAPKRKKFAKKRSRHFSN. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03334 491 SMART 26again6 347 374 IPR006564 GO:0008270
Seca12g03334 491 MobiDBLite consensus disorder prediction 1 26 - -
Seca12g03334 491 ProSiteProfiles Zinc finger SWIM-type profile. 334 372 IPR007527 GO:0008270
Seca12g03334 491 MobiDBLite consensus disorder prediction 1 27 - -
Seca12g03334 491 Pfam FAR1 DNA-binding domain 61 150 IPR004330 -
Seca12g03334 491 PANTHER OS01G0519700 PROTEIN 48 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03334 Seca-Chr12 70526009 70528122 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g03334 FAR1 2.7e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03334 - - ccaj:109792835 277.715