Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03331 ATGGCTCGCTCTGTGCCTTTGGTGTGCACCATTTTTGTCTTCCTTCTGCTTCTGGTGGCCACTGAGATGGGGCCAACCATGGTGGCTGAAGCAAGGACTTGTGAGTCTCAAAGTCACCGTTTCAAAGGACCATGTGTGAGTGACACCAATTGTCGCTCTGTTTGTAGAACAGAACGCTTCACTGGAGGACATTGTCGTGGCTTCCGTCGCAGATGCTTCTGCACTAAACATTGTTAA 237 0.4979 MARSVPLVCTIFVFLLLLVATEMGPTMVAEARTCESQSHRFKGPCVSDTNCRSVCRTERFTGGHCRGFRRRCFCTKHC. 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03331 78 ProSitePatterns Gamma-thionins family signature. 32 55 IPR008176 GO:0006952
Seca12g03331 78 PRINTS Purothionin signature 63 77 IPR008176 GO:0006952
Seca12g03331 78 PRINTS Purothionin signature 33 48 IPR008176 GO:0006952
Seca12g03331 78 SUPERFAMILY Scorpion toxin-like 32 78 IPR036574 -
Seca12g03331 78 CDD Knot1 43 75 IPR003614 GO:0006952
Seca12g03331 78 Gene3D - 31 78 IPR036574 -
Seca12g03331 78 PANTHER DEFENSIN-LIKE PROTEIN 1 8 78 - -
Seca12g03331 78 Pfam Gamma-thionin family 32 78 - -
Seca12g03331 78 SMART gth_4 33 78 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03331 Seca-Chr12 70005864 70006373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03331 1 78 Plant Defensins Gene Families AT2G02100 61.538 1.52e-30 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03331 - - gmx:547843 149.828