Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03321 ATGGTTTGGAGGAAACTCATAAGAAATCCTAATACCTACTCAAGTCTTTTGGGACTCACATGGTCCCTCATATCATACAGGGAAAATACAGTGAGCACTCTTGGTCGTTTTGTGCTGCTTATATGGCTATTTGTAGTTCTAATAATTAACTCAAGCTACACGGCAAGCCTGACTTCAATCCTCAATCCTCAGAGCAAATTGAGCCGGTCCAAATTGTATACTCTATCTAAAGTAGGGATTGAATTTGAAAGCTATGAGAAACAATTTGAAAATAGGGGCCCTATGAGCACAGAACAACTTGTTGCAGCAGCAACGACCAAGATCAAAGAAGGCAGCAATGACAGCGACCAAGAACAGAGAAGACTGCTGCAGCAGAAACAACCAGCAACAACGCGACCAAATGGAAGACGAAAAAATGCCCGAAAGACTGCAAGATTGACGAACGGTTTCTGCAGGAACGCGTGA 465 0.4301 MVWRKLIRNPNTYSSLLGLTWSLISYRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILNPQSKLSRSKLYTLSKVGIEFESYEKQFENRGPMSTEQLVAAATTKIKEGSNDSDQEQRRLLQQKQPATTRPNGRRKNARKTARLTNGFCRNA. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03321 154 MobiDBLite consensus disorder prediction 109 141 - -
Seca12g03321 154 Pfam Ligand-gated ion channel 12 64 IPR001320 GO:0015276|GO:0016020
Seca12g03321 154 Pfam Membrane transport protein 1 30 IPR004776 GO:0016020|GO:0055085
Seca12g03321 154 Gene3D - 8 120 - -
Seca12g03321 154 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 94 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03321 Seca-Chr12 69673009 69674625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03321 23 69 Ion Channels AT1G05200 76.596 1.80e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03321 K05387 - zju:107417070 68.1662