Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03318 ATGGGTACAAGCACAGTCAATACAACTGTGATGTCTTCAACATGTTGGACAATAAATTCCTATCCTTCTTTCCAAAAAGGTGGTATCATTATCCACAACAATAGCTGCAACAAACAGAAGGTCAAAAGAGGACTTTGGTCACCTGAAGAAGATGAAAAGCTTATCAACTATATCACAACTTATGGACATGGTTGCTGGAGCTCTGTCCCAAAACTTGCAGGCTTACAGAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGCTTCTCTCCTCAAGAAGCAGCACTCATTATTGAACTTCATAGTATTCTAGGAAACAGGTGGGCTCAAATAGCGAAGCACCTACCAGGGAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAGCTCCTTTCTCATGATGTTGTTCCTTCTTTAACCACATTTTCTGATCATATTCATCACTGTCCTCCCAATGGGACAACTACCATGTATCATAGACATGGACCTCCCCATGAGGAGGCTGAGGCTGAGGCTGAAGCTGGTGCTGGGGACCATCATCACAGGCTTTTATCTTATGAATGTAGCTTTCTAGGTGCTGATAGTGGAGGTCTCCAGGAGGCTGTAACAACTGGAGTTGGAGCAAATTTTATTTACATTTTGATGTCCAACATTACTTCAAAGACTCTTTATTGTGTATCTATTGACTATGCTTTATGCCCTTTTGATAGGAGTTTCCCTGCTAATTGTCTTCATGAAGTGAGGAAGGGGTAG 798 0.4085 MGTSTVNTTVMSSTCWTINSYPSFQKGGIIIHNNSCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVVPSLTTFSDHIHHCPPNGTTTMYHRHGPPHEEAEAEAEAGAGDHHHRLLSYECSFLGADSGGLQEAVTTGVGANFIYILMSNITSKTLYCVSIDYALCPFDRSFPANCLHEVRKG. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03318 265 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Seca12g03318 265 CDD SANT 46 90 IPR001005 -
Seca12g03318 265 FunFam MYB transcription factor 35 95 - -
Seca12g03318 265 CDD SANT 98 138 IPR001005 -
Seca12g03318 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Seca12g03318 265 PANTHER MYB DOMAIN PROTEIN 55 35 177 - -
Seca12g03318 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 90 IPR017930 -
Seca12g03318 265 SUPERFAMILY Homeodomain-like 40 137 IPR009057 -
Seca12g03318 265 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Seca12g03318 265 FunFam Myb transcription factor 98 145 - -
Seca12g03318 265 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
Seca12g03318 265 Pfam Myb-like DNA-binding domain 96 138 IPR001005 -
Seca12g03318 265 Gene3D - 98 145 - -
Seca12g03318 265 SMART sant 95 143 IPR001005 -
Seca12g03318 265 SMART sant 42 92 IPR001005 -
Seca12g03318 265 Gene3D - 40 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03318 Seca-Chr12 69611059 69615541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03318 32 147 MYB Transcription Factor Family AT3G13890 93.966 5.01e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g03318 Myb_DNA-binding 8.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03318 K09422 - gmx:102662609 268.855