Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03303 ATGAAGAAATTGGAATCATCTGAAGCAGGTATATTCAAACTGCAAGAGAATCAACATGAAGATACCAAAGTTACAAAATTTGGTGGAGGTTCAGTAACAGCTCCCTCTAATTCTGGAAGCAGTAAGGATCCTGTGAACAAGTGGATGGCATTTGCTAACAAGACTGATTCTGCAATGAAGGGTCCTTTTTCTTTGGATACAAACAATATAATGAAAGACAGTGACTGGAGGAATCATTTGAATGTGGAGTCATCTTCTGATCATAAAATTTTAACTGAAGCAGCCATAGCTGAGAGAGCTGCTGAATGGGGTCTTGTGGTGAACTCAGGGAATTTTAAATCATCAGGAGTAGAGAAAACAAGTTCCTCTTTTGATGGTGATAGAAGCAAATCTGATAGGTTTGTTGAATCAACAAGGACTTCTGGGGACTCAAATTATGGGTCAGAATCATCATCAGGGGTGTTCCCAAGGGTGTCACAAGAGTTGAAGGAAGCATTAGCCACACTGCAACAGACATTTGTTGTATCAGATGCAACCAAACCAGACTGTCCAATTATGTATGCCAGCAGTGGCTTTTTTACTATGACTGGTTATTCCTCAAAGGAAGTTATTGGAAGGAATTGTCGATTTCTTCAGGGGCCAGATACAGACAAGAATGAAGTGCAGAAAATTAGGGATTCAACTAGAAATGGGAAAAGCTATTGTGGAAGGCTTTTAAACTACAAGAAAGATGGAACTCCATTTTGGAACCTTCTCACTATCACTCCCATCAAAGATGACCATGGCAATACTATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCGTGAATGAAAAGGAACTACGACCAAATGGATTGCCAAAGTCATTAATTCGATATGATGCTCGTCAAAAGGAGGAAGCATTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGGACCCAAGATCCATTATTCGGGATATTAATGATGACAGTTCCATCAAGCATGAAGAGGCAGAGAAGTTGAATTTTGATTTTCTTTTGCCAAAGTCTGTTGAAACTGGGAACACTAGTACACCTGATAGACGCAGTTCTCCACCGAACTTCCAAGTTGATAACATGTCACGCGTTAGTTCTTATGAGGAAAGGAACAAGACTTCAAGAAAATCAGCAAGGGTTTCTTTCAAAGGTTTTAAAGGGAGATCTATGAGTTCTTCAGTGAAAGATAAGGAGAAGCCCATTGTTGAACCTGAAATTTTGATGACCAAGGAAATTGACTGGACTAATAGTTTAGAGAGTTCTCTGAGAGAGAGGGATATAAGGCAGGGAATTGATCTAGCAACCACATTGGAGCGGATAGAAAAGAATTTTGTGATTTCTGATCCTAGACTTCCAGATAATCCAATTATATTTGCATCTGATAGCTTTCTCGAACTTACAGAATATACACGAGAAGAAATTTTGGGTCGAAACTGTCGGTTTCTCCAAGGACCAGAAACAGATCAAGCAACTGTTTCAAAAATTAGAGACGCTATCAGAGAACAGAGGGAAATCACTGTTCAGTTGATCAACTATACCAAGAGTGGAAAGAAATTCTGGAACTTGTTTCACTTACAACCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAATTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGAGAGCTGAGCAACAAAGTGCTAAGTTGGTTAAAGCCACTGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCTGACGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTCTTACCACGACCTCACAAAAAGGATAATCCTTCTTGGGTAGCAATACAAAAGATAACTGCAAGAGGTGAAAAAATTGGCCTGCATCATTTTTCGCCCATAAGGCCATTGGGTTGTGGAGATACTGGCAGTGTTCATCTGGTGGAACTCCAAGGTACCGGCGAACTATATGCAATGAAGGCAATGGAAAAGTCTGCAATGCTAAATCGTAATAAGGTGCACCGAGCATGCATTGAGAGAGAGATTATATCATTACTGGATCATCCTTTTCTTCCAACACTTTACACCTCATTTCAGACTGCTACACATGTATGTTTGATTACTGACTTCTGCCCTGGGGGAGAGATGTTTGCATTGCTTGACAAGCAACCCATGAAGATTTTCAAAGAAGAATCAGCAAGATTCTATGCAGCAGAGGTTGTTATTGGTTTGGAATATCTCCACTGTTTAGGTATAATTTATCGTGACTTAAAGCCTGAAAATGTCTTACTTCAGAAGGATGGCCATGTTGTATTAACTGACTTTGATCTATCATTTATGACATCTTGTAAACCCCAGGTTGTGAAGCACTCACCACCTAGTAAGAGAAGATCACGAAATCAACCACCACCTACATTTTTTGCAGAGCCAGTTACACAATCAAACTCATTTGTTGGAACAGAAGAATACATTGCCCCTGAAATTATTACCGGAGCTGGGCATACCAGTGCTATAGATTGGTGGACCCTTGGTATCTTGTTGTACGAGATGCTCTATGGTCGTACACCGTTTAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGACCTAACATTTCCAAGCAGCATTCCGGCTAGTCTTGCAGCCAGGCAGTTGATTAATGCACTATTGCAAAGAGACCCAGCCAGTCGTCTAGGTTCAACTACTGGAGCCAATGAAATCAAACAACATCCTTTTTTCCGTGGGATTAATTGGCCTTTAATTCGCAACATGGTAGTATCCTTGTGA 2832 0.4057 MKKLESSEAGIFKLQENQHEDTKVTKFGGGSVTAPSNSGSSKDPVNKWMAFANKTDSAMKGPFSLDTNNIMKDSDWRNHLNVESSSDHKILTEAAIAERAAEWGLVVNSGNFKSSGVEKTSSSFDGDRSKSDRFVESTRTSGDSNYGSESSSGVFPRVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEVIGRNCRFLQGPDTDKNEVQKIRDSTRNGKSYCGRLLNYKKDGTPFWNLLTITPIKDDHGNTIKFIGMQVEVSKYTEGVNEKELRPNGLPKSLIRYDARQKEEALGSITEVVQTVKDPRSIIRDINDDSSIKHEEAEKLNFDFLLPKSVETGNTSTPDRRSSPPNFQVDNMSRVSSYEERNKTSRKSARVSFKGFKGRSMSSSVKDKEKPIVEPEILMTKEIDWTNSLESSLRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSERAEQQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVLPRPHKKDNPSWVAIQKITARGEKIGLHHFSPIRPLGCGDTGSVHLVELQGTGELYAMKAMEKSAMLNRNKVHRACIEREIISLLDHPFLPTLYTSFQTATHVCLITDFCPGGEMFALLDKQPMKIFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENVLLQKDGHVVLTDFDLSFMTSCKPQVVKHSPPSKRRSRNQPPPTFFAEPVTQSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPASRLGSTTGANEIKQHPFFRGINWPLIRNMVVSL. 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03303 943 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Seca12g03303 943 ProSiteProfiles Protein kinase domain profile. 642 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03303 943 FunFam LOV domain-containing protein 430 594 - -
Seca12g03303 943 CDD PAS 185 274 IPR000014 -
Seca12g03303 943 MobiDBLite consensus disorder prediction 29 44 - -
Seca12g03303 943 MobiDBLite consensus disorder prediction 138 153 - -
Seca12g03303 943 FunFam Putative LOV domain-containing protein 172 328 - -
Seca12g03303 943 MobiDBLite consensus disorder prediction 123 137 - -
Seca12g03303 943 Gene3D Phosphorylase Kinase; domain 1 641 725 - -
Seca12g03303 943 MobiDBLite consensus disorder prediction 1 23 - -
Seca12g03303 943 CDD STKc_phototropin_like 640 939 - -
Seca12g03303 943 SUPERFAMILY Protein kinase-like (PK-like) 619 939 IPR011009 -
Seca12g03303 943 MobiDBLite consensus disorder prediction 114 153 - -
Seca12g03303 943 Coils Coil 565 585 - -
Seca12g03303 943 CDD PAS 464 556 IPR000014 -
Seca12g03303 943 Gene3D Transferase(Phosphotransferase) domain 1 726 938 - -
Seca12g03303 943 ProSiteProfiles PAS repeat profile. 441 514 IPR000014 -
Seca12g03303 943 MobiDBLite consensus disorder prediction 797 817 - -
Seca12g03303 943 SMART pac_2 235 277 IPR001610 -
Seca12g03303 943 SMART pac_2 518 560 IPR001610 -
Seca12g03303 943 ProSiteProfiles PAC domain profile. 232 286 IPR000700 -
Seca12g03303 943 SUPERFAMILY PYP-like sensor domain (PAS domain) 179 271 IPR035965 -
Seca12g03303 943 SMART pas_2 443 512 IPR000014 -
Seca12g03303 943 SMART pas_2 160 229 IPR000014 -
Seca12g03303 943 Gene3D PAS domain 431 594 - -
Seca12g03303 943 FunFam Putative LOV domain-containing protein 726 940 - -
Seca12g03303 943 PANTHER FLIPPASE KINASE 1-RELATED 138 939 - -
Seca12g03303 943 Gene3D PAS domain 172 337 - -
Seca12g03303 943 FunFam LOV domain-containing protein 641 725 - -
Seca12g03303 943 ProSiteProfiles PAS repeat profile. 158 231 IPR000014 -
Seca12g03303 943 Pfam PAS domain 464 556 IPR000014 -
Seca12g03303 943 Pfam PAS domain 179 275 IPR000014 -
Seca12g03303 943 ProSiteProfiles PAC domain profile. 515 569 IPR000700 -
Seca12g03303 943 Pfam Protein kinase domain 645 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03303 943 MobiDBLite consensus disorder prediction 351 371 - -
Seca12g03303 943 SMART serkin_6 642 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03303 943 NCBIfam PAS domain S-box protein 467 558 IPR000014 -
Seca12g03303 943 NCBIfam PAS domain S-box protein 184 275 IPR000014 -
Seca12g03303 943 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672|GO:0006468
Seca12g03303 943 MobiDBLite consensus disorder prediction 1 45 - -
Seca12g03303 943 SUPERFAMILY PYP-like sensor domain (PAS domain) 460 556 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03303 Seca-Chr12 68844441 68869808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03303 55 939 AGC Kinase Gene Family AT5G58140 71.573 0.0 1257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca12g03303 Pkinase 1.3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03303 K20715 - gmx:100804783 1551.18