Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03297 ATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGACGAAATCAAGAACGTGGTGAACATTGGCGTGATGGGCGTCATGGAGAACATTCTACTTCCAGTCGTTTTGATGAACTGCCTGATGATTTTGACCCAAGTGGAAGACTTCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAGCGAAGGCGGCAAAGAAACTGTGGTTTTGTGGCTTTCATGAACAGAGCTGATGGACAGGCCGCCAAAGATGAAATGCAAGGAGTTGTGGTATATGAATATGAATTGAAAATTGGATGGGGAAAGTCTGTTGCCCTCCCATCACAAGCACTACCCGCTCCTCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAGTACTGTGATCTTGTCTGGCCCATCAGGTCCACCTGTAACATCTGTGCCTAGTCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACTCCTCCTGAGGATGAGCATCTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGCAATCCTCTTTTCAATTTCTTGTTTGTTCTTGGCTCAAAGGAACACACCTACTATGTGTGGAGACTCTACTCATTTGCTCAGGGTGATACTCTTCAAAGATGGCGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCTCATTACCAATGGCAAAAAGTCCGGAACATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTAGAGCCTGAAAGAACACTGACTGATTCACAGAGGGATGAGTTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGATGCTATGGGGTTTGCTTTAGATAACGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTGACGGAATCCCTGACACTACGAGAAACCCCTATTCCAACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTGCATAATAGTAGTGCTCCTGTAAGAAATGCATCAGCATATCGCACAAAGTTTGAAGCAACGTTGCCTGACATAATGGAGAGTTTTAATGATTTGTATCGTAGCATAATGGGGCGCATAACTGCTGAAGCCCTAAAGGAACGTGTACTGAAAGTTTTGCAAGTATGGGCCGACTGGTTTCTCTTTTCTGATGCTTATGTGAATGGCTTAAGAGCCACTTTCCTTCGACCTGGGAACTCTGGCGTAATACCATTCCATTCCATATGTGGTGATGCACCTGAGATTGAGCAGAAAATCACTTCAGAAGATGCAGTTCTTGGTGGCAAGACCAACCAAGATGCAGCATTGGCAATGGGCAGGGGAGCTGCGATGAAGGAGCTAATGGATCTTCCTCTTGCTGAGCTGGAAAGACGGTGCCGACACAATGGATTATCACTTGTTGGTGGTAGAGAAATGATGGTGGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGAGGTTATGAAATAGATGACGAACTGAAATATGCCCACAACCAAGTAAGTTCTGGGAAATATTCAAGTAGCCGACGAGAGACAAGTGCTGAGCCTGAATCAGTGGTGTTGTCTGGATGGAACCACTATAGGGATGAAGATTTACAGTCACAAGGCAAAGGGTCTCTACCTTTGGCGCCAACCCTTCCTATTCCACAGCCCGAACTTAAAGCCTTCACAAAAAAGGAGAAGAATGACCCGGTTTTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAGCAAAGGAGGAGTGGAAAGAATCTCGGATTAAGCTACTCATCTTCTGGCAGTGAGAATGTAGGTGATGGACTTACTAAAGCTGATGAATCAGAGTCTGCTGCTGATACAAGTTTTTCAGCTCATGCTGACAATGGAATGAATGAAGAGCAGAGGTAG 2100 0.4505 MEELKHEQEMRERRNQERGEHWRDGRHGEHSTSSRFDELPDDFDPSGRLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVTSVPSQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPMAKSPEHEKESGSTHAGGRSRRVEPERTLTDSQRDEFEDMLRALTLERSQIKDAMGFALDNADAAGEIVEVLTESLTLRETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKITSEDAVLGGKTNQDAALAMGRGAAMKELMDLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYEIDDELKYAHNQVSSGKYSSSRRETSAEPESVVLSGWNHYRDEDLQSQGKGSLPLAPTLPIPQPELKAFTKKEKNDPVLPASKWAREDDESDDEQRRSGKNLGLSYSSSGSENVGDGLTKADESESAADTSFSAHADNGMNEEQR. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03297 699 SUPERFAMILY RNA-binding domain, RBD 54 150 IPR035979 GO:0003676
Seca12g03297 699 Gene3D - 319 464 IPR008942 -
Seca12g03297 699 ProSiteProfiles CID domain profile. 318 463 IPR006569 -
Seca12g03297 699 SMART rrm1_1 62 138 IPR000504 GO:0003723
Seca12g03297 699 MobiDBLite consensus disorder prediction 622 699 - -
Seca12g03297 699 Pfam Surp module 208 260 IPR000061 GO:0003723|GO:0006396
Seca12g03297 699 MobiDBLite consensus disorder prediction 1 44 - -
Seca12g03297 699 Gene3D Surp module 196 265 IPR035967 GO:0003723|GO:0006396
Seca12g03297 699 MobiDBLite consensus disorder prediction 566 584 - -
Seca12g03297 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 135 IPR000504 GO:0003723
Seca12g03297 699 CDD RRM_SR140 60 143 IPR035009 -
Seca12g03297 699 ProSiteProfiles SURP motif repeat profile. 210 253 IPR000061 GO:0003723|GO:0006396
Seca12g03297 699 SUPERFAMILY ENTH/VHS domain 320 459 IPR008942 -
Seca12g03297 699 MobiDBLite consensus disorder prediction 678 693 - -
Seca12g03297 699 Pfam CID domain 325 453 IPR006569 -
Seca12g03297 699 MobiDBLite consensus disorder prediction 654 669 - -
Seca12g03297 699 Coils Coil 323 343 - -
Seca12g03297 699 SUPERFAMILY Surp module (SWAP domain) 183 265 IPR035967 GO:0003723|GO:0006396
Seca12g03297 699 Gene3D - 1 144 IPR012677 -
Seca12g03297 699 SMART 558neu5 325 460 IPR006569 -
Seca12g03297 699 SMART surpneu2 208 262 IPR000061 GO:0003723|GO:0006396
Seca12g03297 699 MobiDBLite consensus disorder prediction 622 653 - -
Seca12g03297 699 PANTHER RNA PROCESSING PROTEIN LD23810P 1 686 - -
Seca12g03297 699 MobiDBLite consensus disorder prediction 286 321 - -
Seca12g03297 699 MobiDBLite consensus disorder prediction 292 321 - -
Seca12g03297 699 MobiDBLite consensus disorder prediction 1 60 - -
Seca12g03297 699 MobiDBLite consensus disorder prediction 565 584 - -
Seca12g03297 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 142 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03297 Seca-Chr12 68643811 68653655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03297 58 141 Eukaryotic Initiation Factors Gene Family AT1G22760 32.143 5.63e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03297 K12842 - gmx:100776093 1291.17