Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03293 ATGGGTAGCAGTGACGTGGATAAAACCCTAAAAGAGAAGGAGTCTAGGACACCTCCAGCTACGTCACAGGAGCAATCTTCAACACCTGTCACCGGAACAGTTAATCCTGACTGGACTAACTTTCAGGCATATTCTCCTATACCTCCACATGGGTTCTTGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGTGTCCAGCATATTATGCCTCCCTATGGCACCCCACCACATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATTCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCGAATGGTATTGCAGATGCTTCGGGAAATACCCCAGGCAACATTGAAGCTGAAGCTAAGCCTCCTGAGGTCAAGGAAAAATTACCAATCAAAAGATCAAAAGGAAGTTTGTGTAGTTTAAATATGAGTACCGGAAAAAATAATGAACTTGGTAAAACACCAGCGACATCTGCTAATGGGATTCATTCTAAAAGCGGTGAGAGTGAAAGTGAAGGTACTAGTGAAGGAAGTGATGAAAATTCCCAGAATGACTCTCAATTGAAATCCGGAGAGAGGCAGGATTCTTTTGAAGATGAACAATCTCAAAATGGCAGTTCAATGCATGCTCCTCAAAATGGGGTACTTAATACACCTCATACAGTTGTTAACCAAACTATGCCTATCGTACCTATTTCTGCTGCTGGTCCTCTCACAGCAGTTCCTGGTCCCACAACTAATTTAAATATAGGAATGGATTATTGGGGCACACCAACTTCATCCACCATTCCTGTGCTGCGTGGAAAGGTTCCTCCTGCAATTGCTGGAGGGATGGTTAATGCTGGGTCACGAGATAGTGCTCAGTCACAACTTTGGCTGCAGGATGAAAGAGAGCTTAAAAGACAAAGGCGGAAGCAGTCTAATAGGGAATCTGCACGCAGATCCAGGTTGCGAAAGCAGGCTGAATGTGATGAACTTGCCCAACGAGCTGAGGCTTTGAAAGAAGAAAATGCTTCTCTCCGGTCAGAAGTGAGCCGGCTCAGGAGCGAGTACGATCAACTATTCTCTGAGAATGCAGCCCTCAAGAAGAGGCTTGGGCAGATACCTGGGAGCGACGATCTTAGGTCAGGCCAGAACGATCAGCATGCGGCTAATGACACTCAACAGAGTAGTCAGACAGAGGCTGTGTAG 1215 0.4634 MGSSDVDKTLKEKESRTPPATSQEQSSTPVTGTVNPDWTNFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYPFSPFAMPSPNGIADASGNTPGNIEAEAKPPEVKEKLPIKRSKGSLCSLNMSTGKNNELGKTPATSANGIHSKSGESESEGTSEGSDENSQNDSQLKSGERQDSFEDEQSQNGSSMHAPQNGVLNTPHTVVNQTMPIVPISAAGPLTAVPGPTTNLNIGMDYWGTPTSSTIPVLRGKVPPAIAGGMVNAGSRDSAQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVSRLRSEYDQLFSENAALKKRLGQIPGSDDLRSGQNDQHAANDTQQSSQTEAV. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03293 404 MobiDBLite consensus disorder prediction 1 37 - -
Seca12g03293 404 MobiDBLite consensus disorder prediction 302 330 - -
Seca12g03293 404 MobiDBLite consensus disorder prediction 380 404 - -
Seca12g03293 404 Pfam Disordered region downstream of MFMR 135 272 - -
Seca12g03293 404 Gene3D - 307 376 - -
Seca12g03293 404 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 306 369 IPR004827 GO:0003700|GO:0006355
Seca12g03293 404 SUPERFAMILY Leucine zipper domain 307 363 IPR046347 GO:0003700|GO:0006355
Seca12g03293 404 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 399 IPR044827 GO:0003700|GO:0006355|GO:0043565
Seca12g03293 404 SMART brlzneu 304 368 IPR004827 GO:0003700|GO:0006355
Seca12g03293 404 MobiDBLite consensus disorder prediction 145 176 - -
Seca12g03293 404 Coils Coil 324 372 - -
Seca12g03293 404 CDD bZIP_plant_GBF1 309 360 IPR045314 GO:0003700|GO:0006355
Seca12g03293 404 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Seca12g03293 404 MobiDBLite consensus disorder prediction 184 198 - -
Seca12g03293 404 MobiDBLite consensus disorder prediction 208 227 - -
Seca12g03293 404 Pfam bZIP transcription factor 304 366 IPR004827 GO:0003700|GO:0006355
Seca12g03293 404 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 311 326 IPR004827 GO:0003700|GO:0006355
Seca12g03293 404 MobiDBLite consensus disorder prediction 373 404 - -
Seca12g03293 404 MobiDBLite consensus disorder prediction 1 18 - -
Seca12g03293 404 MobiDBLite consensus disorder prediction 19 37 - -
Seca12g03293 404 MobiDBLite consensus disorder prediction 115 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03293 Seca-Chr12 68578197 68583919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03293 1 402 bZIP Transcription Factor Family AT2G35530 60.976 5.71e-165 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca12g03293 MFMR_assoc 4.2e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03293 K09060 - gmx:100101912 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03293 12 68578197 68583919 Seca12g03293 12 68578197 68583919 ECH