Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03289 ATGACCAAAGTGCTAGATGGATCGCTAACAGTACCACCTGGTTACAAATTTTATCCTACTGATGGAGAGTTGATTGAGTATTACTTGAAGGCTAAAATTAATGGCGATTTCATAATTCCTGGTCGAATTCATGATGTTGATGTCTACAAACATCCTCCCAATACACTAGGTAACATGTATAAGCGCAAAGGAGAGCAACATATGTATTTTTTCACTCGAAGAAACCGAAAATACCCAAATGGGAGTCGCCCAGATCGTGCTGTTGGAAGCTCAGGTTTCTGGAAGGCAACTGGGAAAGATTGTGAAATAAGGCACAATGGTTCAATCATTGGAATGAAGAAGTCTTTAGTCTTTTACGAAGGACAGCGACCTAAAAATGTGGTGAAAACCAATTGGCATATGCAAGAATTCACTCTTAAAGAAGAAACATCTAATCATCAAAAAGGGAGTCTTCAGAGTTCAACTGCAGCTACTCACAAGGTATATAATATATATTATTGA 501 0.3812 MTKVLDGSLTVPPGYKFYPTDGELIEYYLKAKINGDFIIPGRIHDVDVYKHPPNTLGNMYKRKGEQHMYFFTRRNRKYPNGSRPDRAVGSSGFWKATGKDCEIRHNGSIIGMKKSLVFYEGQRPKNVVKTNWHMQEFTLKEETSNHQKGSLQSSTAATHKVYNIYY. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03289 166 Gene3D NAC domain 20 166 IPR036093 GO:0003677|GO:0006355
Seca12g03289 166 SUPERFAMILY NAC domain 6 146 IPR036093 GO:0003677|GO:0006355
Seca12g03289 166 ProSiteProfiles NAC domain profile. 11 166 IPR003441 GO:0003677|GO:0006355
Seca12g03289 166 PANTHER NAC TRANSCRIPTION FACTOR 56 11 152 - -
Seca12g03289 166 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03289 Seca-Chr12 68248369 68249130 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03289 9 151 NAC Transcription Factor Family AT4G27410 44.099 1.01e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g03289 NAM 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03289 - - cam:101503045 174.481