Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03286 ATGTGTATTTTTTCACTCGAAGAAACCGAAAATACCCAAATGGGAGTCGCCCAGATCGTGCTGTTGGAAAGCTCAGGTTTCTGGAAGGCAACTGGGAAAGATTGTGAAATAAGGCACAATGGTTCAATCATTGGAATGAAGAAGTCTTTAGTCTTTTACGAAGGACAGCGACCTAAAAATGTGGTGAACACCAATTGGCATATGCAAGAATTCACTCTTACGCTGTCTTTGTTATTAATGAGATTGCGAAGAAAGAAATGA 261 0.3985 MCIFSLEETENTQMGVAQIVLLESSGFWKATGKDCEIRHNGSIIGMKKSLVFYEGQRPKNVVNTNWHMQEFTLTLSLLLMRLRRKK. 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03286 86 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 74 - -
Seca12g03286 86 Gene3D NAC domain 3 86 IPR036093 GO:0003677|GO:0006355
Seca12g03286 86 Pfam No apical meristem (NAM) protein 23 73 IPR003441 GO:0003677|GO:0006355
Seca12g03286 86 ProSiteProfiles NAC domain profile. 1 86 IPR003441 GO:0003677|GO:0006355
Seca12g03286 86 SUPERFAMILY NAC domain 24 77 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03286 Seca-Chr12 68176012 68176272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03286 25 73 NAC Transcription Factor Family AT5G39610 59.184 3.14e-14 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g03286 NAM 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03286 - - tcc:18586534 64.6994