Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03280 ATGATATGGTGCAGATATATTGTCAAAGATGTCCTTGGCCATGGGACATTTGGACAAGTGGCCAAATGCTGGGATTCAGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAGCCTGCGTACTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAATATGATCCGGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGACATTTGTGCATATGCTTTGAACTGCTGGACACAAACTTGTATGAGCTTATCAAGATGAATCATTTTAGGGGATTATCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCACTGTGAAGCCAGCAGAAATCAAGATTATTGACTTTGGATCAGCATGCATGGAGAACCGCACTGTTTACTCCTATATTCAGAGTCGATACTATAGATCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCAATTGATATGTGGTCCTTTGGATGCATAGTGGCGGAATTGTTTCTTGGATTGCCATTATTCCCTGGGGCTTCAGAATTTGATCTTTTGAGGCGGATGATTGAAATACTTGGAGGACAACCACCTGATTATCTACTAAGGGATGCCAAAAGCACAAGTAAATTCTTTAAGTGTATTGGGAGTCTCCAGAACATAGAGAGTAATGAGAGTTCCAAAAATGGAAGTGTGTATCAAGCATTGACGGAGGAAGAATATGAAGCTAGAGAAATGAAGAAGCCAACAATTGGAAAAGAATATTTCAATCATATGAATCTTGAAGCAATTGTTACAAACTATCCCTACAGGAAAAACCTGCCTAAGGAAGATATTGTGAAAGAAAGTCAAATACGATTGGCTCTTATTGACTTTTTGAAAGGGCTTGTTGAATTCGATCCTGCAAAACGCTGGTCACCCTTCCAGGCTTCAAAACATCCTTTTGTAACTGGGGAACCTTTTACACACCCTTACAAGCCTCCCCCTGAGACCCCTCACATTCCGGTAGTTCAAAATATCAAGGTTGATAATCATCCAGGTGGAGGGCACTGGTTTGCTGCTGGTCTATCACCTAATGTTCCAGGCAAAAGCAGAGCTTCCCTTTATAGTAGTCCACATTTTCAGATGGTACAACATCCACCTGCTAATAGTTATGGCAGTGTAGGAAGCCATGGGAGCTATAATGATAGTGTTGGGCTTGGAAGCAGCTATGGAAGTTATGGAGAAAGTAGTAACATGTTTGCTTACTATTCACCTATTGGTCCATCTGGTATGCACATGCACAATCAGGGAAGCATGTCAATTCTTGGAAATAGTCCTGATGCTCGGAGAAGAGTTAAGTACCAACCTGGGAATGGGCTAGGTGTAAGTCCATCAGCTGGAAATTTTGCTCCCCTGCCCCTTGGTGCCAGCCCATCTCAATTTACTCCACCAAGTTCCTATAGTCAGGTTTCAGTTGGTTCTCCAGGACACTATGGACCCACATCTCCTGCAAGAGGAACTTCTCATGGATCACCTTTAGGCAAGACAGCTGCAGTTAGCCAGTTTAATAGAAGAAAAAATTGGGGACATTCTGGAAGTCCTCAAACCCAAGAAACAACATTTTCTTCACATTGGCATGGTCAATATCCTGACAGCTCAAACCATGCTGAAGGAACATCACAAGCTCTTGGCAGTTCACCATCATATCTACAGTCAAATATTAATCCTGGAAACTGGAAGCAGCGAGGAAGTGGAGGGATATCTGCTAATCAGAACATTACATTTATGCCTAATTCCAATATGAACTCGCAATCAACAGAATTGATTCACGATAATGTGGAGACAGGCTTTTCATTGCCTGATCCTGGAGATTGGGATCCGAATTATAGTGATGAACTACTTCTGCAAGAGGATGGTTCAGATGAAAGTAGCTTGACAACTGATTTTGGTAGAAGTATGAATCTTGGTTCCAATGAACCATGGCCTGGGTTCGGAAGGTTCAATCATGTCTCCAACTCAAGCTCTCCAATAATTGTGCAGAGAATAAATGGACCAGGTCAAACATTTTCTAATGTAGAGATGGGTAGCCCTCCAGCACATGATCTTCATGCATCATATGTACCTTCTATGTCAAAGCCTTTTCATCTCATGCCTCATATTTTACAAAATTCTCCAAGCCGTTTTGGACACCAACCTGTTCAAAGATTCACACATGGTAGACCCCCGCAGGGTGGTGAGTGGAATCAAATTAAGATTCAGGCTCCTCCTTCTGGTTTCAGCAGTGTGGGCCCACGTTCTCCCAGGAATACCTCATTCACCAACAGTATGACATGGGGGCGAAGAATGAATCCTCCTGTCTCAAGCATACCACCGACATCCCGTGGAAGAAAAGATTATGCAAGGATAGACTAG 2490 0.4177 MIWCRYIVKDVLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCTSTVKPAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIEILGGQPPDYLLRDAKSTSKFFKCIGSLQNIESNESSKNGSVYQALTEEEYEAREMKKPTIGKEYFNHMNLEAIVTNYPYRKNLPKEDIVKESQIRLALIDFLKGLVEFDPAKRWSPFQASKHPFVTGEPFTHPYKPPPETPHIPVVQNIKVDNHPGGGHWFAAGLSPNVPGKSRASLYSSPHFQMVQHPPANSYGSVGSHGSYNDSVGLGSSYGSYGESSNMFAYYSPIGPSGMHMHNQGSMSILGNSPDARRRVKYQPGNGLGVSPSAGNFAPLPLGASPSQFTPPSSYSQVSVGSPGHYGPTSPARGTSHGSPLGKTAAVSQFNRRKNWGHSGSPQTQETTFSSHWHGQYPDSSNHAEGTSQALGSSPSYLQSNINPGNWKQRGSGGISANQNITFMPNSNMNSQSTELIHDNVETGFSLPDPGDWDPNYSDELLLQEDGSDESSLTTDFGRSMNLGSNEPWPGFGRFNHVSNSSSPIIVQRINGPGQTFSNVEMGSPPAHDLHASYVPSMSKPFHLMPHILQNSPSRFGHQPVQRFTHGRPPQGGEWNQIKIQAPPSGFSSVGPRSPRNTSFTNSMTWGRRMNPPVSSIPPTSRGRKDYARID. 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03280 829 MobiDBLite consensus disorder prediction 779 816 - -
Seca12g03280 829 Gene3D Transferase(Phosphotransferase) domain 1 87 349 - -
Seca12g03280 829 Gene3D Phosphorylase Kinase; domain 1 1 86 - -
Seca12g03280 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Seca12g03280 829 SUPERFAMILY Protein kinase-like (PK-like) 3 371 IPR011009 -
Seca12g03280 829 MobiDBLite consensus disorder prediction 530 612 - -
Seca12g03280 829 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Seca12g03280 829 MobiDBLite consensus disorder prediction 497 612 - -
Seca12g03280 829 SMART serkin_6 6 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03280 829 MobiDBLite consensus disorder prediction 505 522 - -
Seca12g03280 829 PANTHER DUAL SPECIFICITY PROTEIN KINASE 2 351 - -
Seca12g03280 829 Pfam Protein kinase domain 7 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03280 829 ProSiteProfiles Protein kinase domain profile. 6 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03280 829 MobiDBLite consensus disorder prediction 766 829 - -
Seca12g03280 829 CDD PKc_YAK1 6 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03280 Seca-Chr12 67963802 67979915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03280 5 235 MAP Kinase Gene Family AT3G18040 34.146 2.10e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Seca12g03280 Pkinase 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03280 K18670 - gmx:100792777 1569.29