Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03276 ATGCATAGTGTCGAATTTTATCTTTTCTGTCGCCCCATTTTACCCCTTTTTATTGGCAGGGTTGGCGGTTCTTATGATGAAAGACAATTTATAGATGAAAGATATCAAAGGGATGCATTATACCAGAGAAATACTTTCCACAGAGATGTTTTGGATAGGGAGGCCTATATGCCACCAGGACCTGCTGTTGGCCACTGGAGTCAATCCAAGCGGAGAGGTTATGATGAAGATTATCCACTTGAAAGGGAATCTAGACGTTTTCAGAGGCCTTATCATGAATCATATAATCAGATTGATGGTTTCAGGGATCGTGAGATTGACATGTACCCTGAATATGATAAGTTTCGGGATGGTTATAACAACATTGAAAATTATGGTGACCGGGGATATGATAAACCTGCCAGGTTTGTAGGACATGACCATGATGATTATGGATACGATGATTATGGCTACAAGTCCCGTGTATCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGACATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGATAGTAATTGGAGGAGACGTGAATCACGTGATCGGGAACGGGACAAGAGATGTCTTAGTCGTGAAAGAGATGCAAGTCCACATAGGAGACATGAGCGCTCTCGATCCCGTTCCCGTTCTCGATCCCGGTCCCATTCCCATTCTCGTTCCCGTTCCCAATCTCGTGGATATGATGATCATCCAAAATCTAGGTCCCCTCGGGGTCGAAGCCATAGTCGAAGTTATCGAGAAGACAGCTATGTTGACGGTCGATATGATAGAAGTGAAAGACGCAGGGATCGGGAGGATAAACGTCAGCGCGAGCATTATTCTGTGGCCCCGTCTGCAACTGTTGTTGTGAAAGGTCTATCACAGAAGACGACTGAAGAAGATCTATATCAAATCCTTGCTGAGTGGGGGCCCCTTCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCATATCTCGAGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAGCTAGGAGATGATGGTCTTGTCGTGGACGGAAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTGCAGGTCCAGATGGAGCTATGAAATCAGGTCATGGTCATAAGAGCATTACAGTACCATCTGATTGGATGTGCACTATATGTGGCTACATCAATTTTGCACGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGAACAGATGATGCTCCTGCAGCAGATATTTCATTATCAAATTCGACAGCTTCAGGAAAGAAAGGTTTGGAGGCAGGTCCAACTCATGTTTTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAATTTTCCAAACATGCTCCAATCAAGGATCTACGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACAAATGGAACAACACTTGAGAAGAATGGGCAGATTCTAAGAGTAGCATATGCAAAAAGTATATTGGGCCCTGGATCAGGACCGTCAGGAACTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAATCCAGATGAAAAACAATCTACTGGTGCAGAGCAAACTGGCACAGAAGTTGGTGCTCCACAATCAGGCTTTATTTGGGATGAAGCATCGGGTTATTACTACGATGCTGCTTCTGGATTTTATTATGATGGGAATACTGGTATGTTTCTTGGTTGA 1872 0.4391 MHSVEFYLFCRPILPLFIGRVGGSYDERQFIDERYQRDALYQRNTFHRDVLDREAYMPPGPAVGHWSQSKRRGYDEDYPLERESRRFQRPYHESYNQIDGFRDREIDMYPEYDKFRDGYNNIENYGDRGYDKPARFVGHDHDDYGYDDYGYKSRVSHHRREDSHERDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRCLSRERDASPHRRHERSRSRSRSRSRSHSHSRSRSQSRGYDDHPKSRSPRGRSHSRSYREDSYVDGRYDRSERRRDREDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGAGPDGAMKSGHGHKSITVPSDWMCTICGYINFARRTSCYQCNEPRTDDAPAADISLSNSTASGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGPSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDEKQSTGAEQTGTEVGAPQSGFIWDEASGYYYDAASGFYYDGNTGMFLG. 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03276 623 Gene3D - 259 394 IPR012677 -
Seca12g03276 623 MobiDBLite consensus disorder prediction 217 235 - -
Seca12g03276 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 451 531 IPR000504 GO:0003723
Seca12g03276 623 MobiDBLite consensus disorder prediction 569 593 - -
Seca12g03276 623 MobiDBLite consensus disorder prediction 236 288 - -
Seca12g03276 623 ProSiteProfiles Zinc finger RanBP2 type profile. 396 425 IPR001876 -
Seca12g03276 623 MobiDBLite consensus disorder prediction 155 216 - -
Seca12g03276 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 453 519 IPR000504 GO:0003723
Seca12g03276 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 355 IPR000504 GO:0003723
Seca12g03276 623 CDD RRM1_RRM2_RBM5_like 449 529 - -
Seca12g03276 623 PANTHER RNA-BINDING PROTEIN 188 620 - -
Seca12g03276 623 MobiDBLite consensus disorder prediction 155 288 - -
Seca12g03276 623 SUPERFAMILY RNA-binding domain, RBD 284 377 IPR035979 GO:0003676
Seca12g03276 623 SUPERFAMILY Ran binding protein zinc finger-like 391 426 IPR036443 -
Seca12g03276 623 Gene3D - 431 556 IPR012677 -
Seca12g03276 623 SMART zf_4 398 422 IPR001876 -
Seca12g03276 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 374 IPR000504 GO:0003723
Seca12g03276 623 Pfam OCRE domain 593 621 IPR041591 -
Seca12g03276 623 SUPERFAMILY RNA-binding domain, RBD 449 541 IPR035979 GO:0003676
Seca12g03276 623 Gene3D - 395 426 - -
Seca12g03276 623 ProSitePatterns Zinc finger RanBP2-type signature. 400 419 IPR001876 -
Seca12g03276 623 SMART rrm1_1 295 370 IPR000504 GO:0003723
Seca12g03276 623 SMART rrm1_1 452 527 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03276 Seca-Chr12 67726994 67731198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03276 293 515 Eukaryotic Initiation Factors Gene Family AT2G36660 25.896 2.18e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03276 K13094 - gmx:100777686 974.156