Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03275 ATGTTGTTTTATTCATTTTCAATTTATTTTTCATATTCTACATTGTTGTGGCATGTAGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAGTACATCCCTTGCACTGATCAAAGTCAGAATAAAACAGCTAATAATGAGTCTGAACCTTCTAAGGCATCTGATGGTTCCAGCAGTAAAAAGGTGGTGATTTCTGCTCCAGCTACTACTGTTACATCAATTGAGAAACCAGCTTCATTGGCTGATGCTGTCCAAGCTGCTGCAACGGCTGCTTTAGCTGCAGAAAAGAAAGAGAAAGAAAAATCAAAGGAGATAAAACTTGCCTCAAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGGAGCCACGAGGGGCAGGCTACTCGAGTGGCTCTGGAGGACAATCAGTTGTCTGTTTCATCTGATGATAGATCACATTCTTCTGGACATTCTGCAAAGAATAAGTTAAAAACTGAGACTATGGTAAAGGAAAGTAATGCATCTAATCTGGGAAATCACACAACTCTTGCCCAGGTTGCTGCTAATGATTCTCTGGCACAACCACGGCCTGTCAGTAATAGCCTTGGGGGCACTCTGATGGGGGTTATAAGGGGCTCAGGTAGAGGGGTTGTTAAATCAGATACTTATTCTGGTGCTGCATCATCTATATCAAGTTCATCTCCAGCAATTGCTGATGCACAGACAATTGCTACTCCCTTTAAAACAGATGTATCCGCCCTGGGTTCATATACACCATCTGTGGCTGCTGGAAGTGGCCGAAGGAGGTTTTCAGAAATGCCTCATTCTGCTTCTACTCACAAGGACCAGCCTCAAACAACATACAGGGATCGTGCTGCTGAGAGGAGAAGTTTGTATGGCTCATCATCTTCAGTTGGGAATGATTTGGCTGACCTTGAAATTGGGGATTCAATGCCTGATGAGAAGGCTCTAGCCTCTGAGAATAGAGGAAGCTTTAGTTTTACCTTAGGTGTTAAATGTGTATTGACTTTTGAGAAAATATTTGTTTCTACCATATGTATCCTTGAAGATCGAGATTTCACAACAAGGAAGGGTGATCCAATGCCATTCCCTCCTGGGGTTGGTGGAGGACGCATGGTTGGAGATGTCAACCTTGATACTTTTGAGGTGATAACGGCAGACAAAGCAATTGATGAAAGCAATGTTGGTAATCGGATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTAGGAAAGGATGGAAGTGGGATGATAGAACCTGTCCAGACACAAGCCATGGAAAATAGAGCAGGACTTGGGAGTCAGCAGAAGAAGTTGGACCCTAGCCTCGAGGTGCAGGCAGGGGATAGTTACAAGATGCTTATTCATAAAAAAGCGCTTGCCAGATTTCGGGAAATGTCAGAAAGTTAA 1464 0.431 MLFYSFSIYFSYSTLLWHVGLYYDGNNGIWYSYDHQTQQYIPCTDQSQNKTANNESEPSKASDGSSSKKVVISAPATTVTSIEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQLSVSSDDRSHSSGHSAKNKLKTETMVKESNASNLGNHTTLAQVAANDSLAQPRPVSNSLGGTLMGVIRGSGRGVVKSDTYSGAASSISSSSPAIADAQTIATPFKTDVSALGSYTPSVAAGSGRRRFSEMPHSASTHKDQPQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSMPDEKALASENRGSFSFTLGVKCVLTFEKIFVSTICILEDRDFTTRKGDPMPFPPGVGGGRMVGDVNLDTFEVITADKAIDESNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSES. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03275 487 PANTHER RNA-BINDING PROTEIN 20 482 - -
Seca12g03275 487 ProSiteProfiles G-patch domain profile. 409 455 IPR000467 GO:0003676
Seca12g03275 487 SMART G-patch_5 407 453 IPR000467 GO:0003676
Seca12g03275 487 MobiDBLite consensus disorder prediction 152 172 - -
Seca12g03275 487 MobiDBLite consensus disorder prediction 46 68 - -
Seca12g03275 487 MobiDBLite consensus disorder prediction 273 300 - -
Seca12g03275 487 Pfam G-patch domain 410 451 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03275 Seca-Chr12 67724089 67726498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03275 388 454 C2H2 Transcription Factor Family AT5G26610 41.791 1.09e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03275 K13094 - gmx:100787998 668.307