Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03256 ATGGAGAGATACATGTTAATTAAGGAAGTTGGTGATGGAACATTTGGGAGTGTCTGGAGAGCCATTAATAAACAAAGTGGTGAAGTTGTTGCAATCAAGAAAATGAAGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGTCATTAAGAAAAATGAATCACCAAAATATCGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGACATTCTGTACTTAGTTTTTGAGTACATGGAATGCAACCTCTACCAACTTATGAAAAACAGGGAAAAGCTGTTTTCTGAAGATGAAGTCAGAAATTGGTGTTTTCAAGTTTTCCAAGGTCTTGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTGAAACCTGAAAACTTGCTGGTCACCAAGGATATCATAAAAGTTTCTGATTTTGGGCTAGTTCGAGAGATCAGTTCACAACCACCCTATACAGACTACGTCTCCACACGGTGGTATCGTGCTCCTGAAGTCCTGCTTCAGTCTTACCTGTATAGCTCTAAAGTTGACATGTGGGCAATGGGTGCTATTATGGCTGAGTTGTTCACTCTCCGTCCTCTCTTTCCGGGTTCCAGTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAGTGAATCTTGGGCAGATGGACTCAAACTCGCTAGGGATATCAACTATGAATTTCCACAGCTTGCTAGTGTAAATCTCTCTGTACTGATCCCATCTAGAAGTGAGCATGCAATCAACCTTATCACATCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAACAGAGGCCCTTCAACATCCTTTCTTCCAGAGTTGCTTTTACATCCCTCCATCCCTTCGCACCAGAGCAGTGACCAGAACTCCTCCATCTGCTGGAACCAGGGGAGCACTGGATCGGCAAGGGGTTAGGAGATTCTCTGGTGCTTTGCCTAATTCAAAACTCACCAATAATTTTTCTTCCCCGAAATTACATCCTTCCTTAGCTTCAGAACTTGGTTCTCATTCATTTCTAAACATTACAGGTGTGCAACGGAAGCTGGATATGGCCAATGAGGATGGAATTAAGAACAAGAAGTCATTGAAGACTACTCAACAATCAAAATATCAACCACCAGGAAAATACAGCCCTACTTCTATGAACAAGGGGAGGACTGCACGTGGTGTTTCAGTGACAGCTGAGAAGTTGGCCAATGTGTCTATTGGTACTCGAAGACAGTCCTTGGGGCAAACCCGTCCGCCTCCAATGAAGGCTGGAGTCAATTGGATTTCTGAATCTGGAAACTGCCTGCTCAGGCCAGCCCAACAGATTCCAACTGGTAGAACTTTCTCAAGAAAAGTTGCTGGATGA 1389 0.4341 MERYMLIKEVGDGTFGSVWRAINKQSGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHQNIVKLKEVIRESDILYLVFEYMECNLYQLMKNREKLFSEDEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKVSDFGLVREISSQPPYTDYVSTRWYRAPEVLLQSYLYSSKVDMWAMGAIMAELFTLRPLFPGSSEADEIYKICSVIGSPTSESWADGLKLARDINYEFPQLASVNLSVLIPSRSEHAINLITSLCSWDPCKRPTATEALQHPFFQSCFYIPPSLRTRAVTRTPPSAGTRGALDRQGVRRFSGALPNSKLTNNFSSPKLHPSLASELGSHSFLNITGVQRKLDMANEDGIKNKKSLKTTQQSKYQPPGKYSPTSMNKGRTARGVSVTAEKLANVSIGTRRQSLGQTRPPPMKAGVNWISESGNCLLRPAQQIPTGRTFSRKVAG. 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03256 462 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03256 462 MobiDBLite consensus disorder prediction 373 399 - -
Seca12g03256 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Seca12g03256 462 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03256 462 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Seca12g03256 462 SUPERFAMILY Protein kinase-like (PK-like) 1 287 IPR011009 -
Seca12g03256 462 FunFam cyclin-dependent kinase F-4-like 1 83 - -
Seca12g03256 462 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Seca12g03256 462 SMART serkin_6 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03256 462 MobiDBLite consensus disorder prediction 368 402 - -
Seca12g03256 462 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 339 - -
Seca12g03256 462 FunFam serine/threonine-protein kinase MAK isoform X1 84 293 - -
Seca12g03256 462 CDD STKc_MAK_like 4 283 - -
Seca12g03256 462 Gene3D Transferase(Phosphotransferase) domain 1 83 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03256 Seca-Chr12 66960957 66969709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03256 1 290 Core Cell Cycle Gene Families AT3G48750 36.577 8.55e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Seca12g03256 Pkinase 3.9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03256 K08829 - gmx:100784474 812.372