Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03255 ATGGAGAAAACGAGGTCCTCAGATCAAGTCGTTCTCTTCATTGACCAACACAACCCTCCTAAATCTTCCCCTATGGACACTGAAAATCAAAATCCCCTCCAGACTGCAGAAACTAATGAGAAGCCCAAACACCCCGCACCTGTAAGAGTCAAAACTCTTAACCGTCTCAGCTTCTCCAAACCCAAATCCCGAATCCTTGAATATAACTACCCACCCCGCACCAACAAACTAACAACCTCTGAAGAAATCGACATCCAACCTCCTTACAAGTTCTCTTCCCTCGATGAAGAAGACGACGACGACGAATGGGACGAAGAAGATGAAGAAGAGAATGACGAGGAAGATGGTGAAGAGCACGGTCCAAAGTTACGCCAAAAGAAGAAATTCAAGGTGAAGTGGAGGCTCCTGATGGAGTGGGTTTTATTCCTCAACATACTAACATGCCTCGTGTGTTCCCTCACCATAACTTCCATAACAAACATGCACGTGTGGGGTTTAGAGATATGGAAGTGGTGTTTGATGGTAATGGTCACATTCAGTGGCCGTTTGGTGTCAGGGTGGTTAGTTAGCGTAACCGTTTTCATCATCGAGCGAAACTTCATGCTAAGAGAGAAGGTCTTATACTTCATCTACGGCCTCAGAAAGAGCATAAGAAACTGTTTATGGTTAGGCCTCGTTCTTCTCTCCTATTGGAGCGTCGTCTTCGACGACGTGCAGAAGAAAAACCACAAGTTCCTCAACAAACTATTTCAAGCACTTGTGGCTGTGTTAGTAGGTGCTACCATATGGTTAGTGAAGATCGTGCTGGTGAAGGTGTTAGCCTCGTCTTTTCATGTAACAACTTATTTTGACAGAATGAAAGAGAGCGTTTTCCATCACTACATATTGGACACGCTTTCAGGTCCACCCATGGATGCTGAGCAAATGCTGTTGCAAGAGCACCACCTGAGTGGGTCCAAGTCGATGCCTGCGAGGTGGAAGGAAGGGAGGAAGTTGAAGGATGCTAATAATTTGTATAAGTCGAAGAGATTTGGGTCGAGGAAGATTGATATGGAGAAGCTGAGAGAGCTTAGCATGGAGAGCACTGCATCTGCTTGGAGTGTGAAGAGGCTTGTTAATTATGTTAGGTCTTCTGGATTGTCCACGATTTCAAGGACTGTGGATGATTTTGGGAGTGCTGAGTCTGAGATTAGCAGTGAGTGGGAAGCTAGAAATTGTGCTCAGAGGATTTTCAAGAATGTTGCCAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTCACCAGATTTTTGAAGAGGGTTGAGATACATACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACTGGGAAGATTAGTAGGTCTTCATTTAGAAATTGGGTGATTCGAGCTTATTATGAACGAAAAGCTCTAGCACAATCACTCAATGATACCAAAACAGCAGTGCAGCAGCTTCACAAGCTAGCAAGCGCGGTTGTGAGTGTGATAATAATCATTGTGGTCCTTTTGGTGATGGGGGTGGCTACAATGAAGATAATATTATTCTGCATTACACAAACCGTTTTAATAGGGGTTGCCTTCCAAGGTACTTGCAAGACAGTCTTGGAGGCTATCATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGTGATCGCTGCGTCATTGATGGTGTTCAGATGACTGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGACATGACAATGAGAAAATATATTACCCAAATGCAGTTTTGCTTTCTAAGCCAATAAGCAACTTCTATAGGAGTCCAGAGATGTGGGATTCAATTGATTTCACCATTGACGTGACAACTCCCATGGAGACTATCATTGCACTCAAGAAATCAATACAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACAGTGTGATTGCAAAACAAATAGAAAATGTGGACAAGTTGAAGCTGTGCTTATGTGTGCAACACACCATCAACCATCAGAACTACGGGGAACGAAACATTAGGATAACGGAGCTCCTCTTGGAATTGAAAAAGATATTTGAGATCCATGGCGTCAAGTACCATCTTCTTCCTCAAGAGATCCACCTTACCCAGATGAACCTTGAAAATGGGAGAGTTTTGTTTCAATCATGA 2151 0.4324 MEKTRSSDQVVLFIDQHNPPKSSPMDTENQNPLQTAETNEKPKHPAPVRVKTLNRLSFSKPKSRILEYNYPPRTNKLTTSEEIDIQPPYKFSSLDEEDDDDEWDEEDEEENDEEDGEEHGPKLRQKKKFKVKWRLLMEWVLFLNILTCLVCSLTITSITNMHVWGLEIWKWCLMVMVTFSGRLVSGWLVSVTVFIIERNFMLREKVLYFIYGLRKSIRNCLWLGLVLLSYWSVVFDDVQKKNHKFLNKLFQALVAVLVGATIWLVKIVLVKVLASSFHVTTYFDRMKESVFHHYILDTLSGPPMDAEQMLLQEHHLSGSKSMPARWKEGRKLKDANNLYKSKRFGSRKIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFGSAESEISSEWEARNCAQRIFKNVAKPGAKYIEEEDLTRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAVVSVIIIIVVLLVMGVATMKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVQMTVEEMNILTTVFLRHDNEKIYYPNAVLLSKPISNFYRSPEMWDSIDFTIDVTTPMETIIALKKSIQMYIESKPKYWNPKHSVIAKQIENVDKLKLCLCVQHTINHQNYGERNIRITELLLELKKIFEIHGVKYHLLPQEIHLTQMNLENGRVLFQS. 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03255 716 PIRSF Memb_At2g17000 2 715 IPR016688 -
Seca12g03255 716 Pfam Mechanosensitive ion channel 487 692 IPR006685 GO:0016020|GO:0055085
Seca12g03255 716 MobiDBLite consensus disorder prediction 88 121 - -
Seca12g03255 716 FunFam Predicted mechanosensitive ion channel 546 595 - -
Seca12g03255 716 MobiDBLite consensus disorder prediction 94 116 - -
Seca12g03255 716 MobiDBLite consensus disorder prediction 20 38 - -
Seca12g03255 716 SUPERFAMILY Sm-like ribonucleoproteins 537 595 IPR010920 -
Seca12g03255 716 Gene3D - 546 595 IPR023408 -
Seca12g03255 716 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 21 706 IPR016688 -
Seca12g03255 716 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03255 Seca-Chr12 66842292 66849164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03255 39 706 Mechanosensitive Ion Channel Family AT5G12080 43.768 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03255 K22048 - gmx:100813521 1117.83