Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03249 ATGGCCATTCCTGCCATCATACTTGTTACTGCCAAGCTACTTCTGTTCTTTACAAAAGTTTCCACTACAACTGATACCATTACTACCTCACAATCACTTCCTGATGGTAGCACCTTAGTGTCACAAGATGGAACCTTTGAATTTGGTTTCTTCTGTCTAGGAAACTCCACAAACTGCTATGTAGGAATCTGGTTCAAAAACATACCAACAAGAACCATTGTTTGGGTTGCAAACCATGACAATCCAATCAAAGAGAACTCCAGCATGTTGAGCATAAGCAAAGAAGGAAGCCTTATCCTTCTCAGCAAGAATGGCACAGTTCATTGGTCAACAAACTCAACAAGGAAGGCCTTGAGTCCAATTGTGCAGCTCTTAAACACTGGGAATTTAGTACTAAGAGACAAAGAGGACAACAACAACAACAAAAAAAATAGCTTTGACTATCCTTCAAATACACTATTGCCAGGGATGAAGCTTGGTTGGGATAGAAAAACAGGTTTCAATAGACATGTTACTGCTTGGAAGAATTGGGATGATCCATCTCCAGGGGACTTTACTTGGGGTATTACACTTGACAACAACAACCCTGAAATGGCACTATGGAAAGGCTCAGAAGAGTACCACAGGAGTGGTCCTTGGAATGGTGCTAGGTTCAGTGGGGCTTTCAGTGGTTCAAATGTGTTAAGCACTCATCCACTTTATCTTTACAAATTGGTCAACAATGAAGATGAAGTGTATTACACATATAACTTAGTGAATAAGTCTGTGATTTCAATAGCTGTCATGAACCAAACTGTTTATAGCCGTCAACGCTTGATATGGATTCCTGAAAACAGAACATGGAGCCTTTTCCAAACTGCGCCAAGAGACATTTGTGATACTTATAATCCTTGTGGTTCTTATGCTAATTGCAAGGTTAATGACTCACCTGTGTGTCAATGTTTAGAAGGATTTGAGCCGAAAAGTTCTCAGAATTTGGAGATTAAAGGATGTGTTCGTAGTGAACCGTGGAGCTGCAGGGTTGAAGGCAGAGATGGTTTTCGGAGATTTGTTGGGTTGAAATTTCCAGATACTACTCATTCTTGGGTTAATAAAAGCATGACACTTGAGGATTGCAAGGCTAAATGCTTGGAGAATTGTTCATGTACTGCTTATGCAAACTATGACATAAGAGGAGGAGGTAGTGGTTGTTGCATTTGGTTTGGTGATCTTATTGATTTAAAACTGGTTTCACAAAGTGGGCAATATCTATATATTCGAATGGCTGATTCATGGACAGGTAAAAAACTTGGTCTTATGTTTCATTGTTTTCAACCTGAAAATGTAGATGCTAAACATGACCATAAGAAAAAGGCAATCTTGGTAATTACAATCGCACTTCCAATTATTTTTGTGATGCTTTTGTCATTCTCCTACATTTACAGGAGCAGAAGAAATTACAGAGTGGTTAATCTCTCAGAGAAAACCATGTCTGTAGAAAAGAAAGATGGAGGTGATGAACAAGAAGATCTGGAACTTCCTTTTTTTGATCTCGCTACAATTGTTAATGCCACCAACAACTTCTCAATTGGCAACAAACTTGGGCAAGGTGGTTTTGGACCTGTATATAAGGGTATACTAGCAAATGGACAAGAGATTGCTGTCAAAAGGCTTTCAACAAGTTCTGGACAAGGATTAAAAGAATTTAAGAATGAAGTTATATTATGTGGCAAACTTCAACATCGAAATCTTGTTAAGGTTCTTGGTTATTGCATTGATGAAGAAGAGAAAATGCTAATCTATGAATACATGCCTAACAAAAGTCTAGATTCATTTCTTTTCGATTCAACTCAAAGGAAGAGTTTAGACTGGTCCAAGCGCTTCCACATTTTGTGCTCAATTGCTCGAGGGCTTCTTTATCTACATCAAGATTCTATATTAAGAATAATACATAGAGATCTAAAAGCAAGCAATGTTTTATTAGATGACAACATGAACCCAAAAATTTCAGACTTTGGGTTGGCCAGAATGTGTGGAGGTGATCAAACTGAAGGAAATACGAACAGGGTAGTTGGAACATATGGTTATATGGCACCTGAATATGTTACTCATGGATTATTCTCCACAAAATCTGATGTATTTAGCTTTGGCATATTGTTGTTGGAAATTGTAAGTGGAAAGAAAAACAGAGAGGTTACCTATCCGTACCACAGTCATAATCTTATCGGGCATGCATGGCGATTGTGGAAACAAGGCATACAAAATGAATTGATTGATACTTGTCTCGAGGACTCGTGTATCCTATTAGAAGCCTTACGTTGCATTCATATCAGTCTTTTATGCCTACAACGTCAACCTGATGATCGACCAAACATGGCATATGTAGTTATGATGTTAAGCAGTGAGAGTGATTTACCTCAACCAAAGGAACCTGGTTTCTTAATAGACAATATCCCAAATGAAGAAGAATATCCTTTTAGAAACCATACTTCTTCTACTAATGAAGTAACTATTTCGATATTAGATGCTAGATAA 2514 0.3795 MAIPAIILVTAKLLLFFTKVSTTTDTITTSQSLPDGSTLVSQDGTFEFGFFCLGNSTNCYVGIWFKNIPTRTIVWVANHDNPIKENSSMLSISKEGSLILLSKNGTVHWSTNSTRKALSPIVQLLNTGNLVLRDKEDNNNNKKNSFDYPSNTLLPGMKLGWDRKTGFNRHVTAWKNWDDPSPGDFTWGITLDNNNPEMALWKGSEEYHRSGPWNGARFSGAFSGSNVLSTHPLYLYKLVNNEDEVYYTYNLVNKSVISIAVMNQTVYSRQRLIWIPENRTWSLFQTAPRDICDTYNPCGSYANCKVNDSPVCQCLEGFEPKSSQNLEIKGCVRSEPWSCRVEGRDGFRRFVGLKFPDTTHSWVNKSMTLEDCKAKCLENCSCTAYANYDIRGGGSGCCIWFGDLIDLKLVSQSGQYLYIRMADSWTGKKLGLMFHCFQPENVDAKHDHKKKAILVITIALPIIFVMLLSFSYIYRSRRNYRVVNLSEKTMSVEKKDGGDEQEDLELPFFDLATIVNATNNFSIGNKLGQGGFGPVYKGILANGQEIAVKRLSTSSGQGLKEFKNEVILCGKLQHRNLVKVLGYCIDEEEKMLIYEYMPNKSLDSFLFDSTQRKSLDWSKRFHILCSIARGLLYLHQDSILRIIHRDLKASNVLLDDNMNPKISDFGLARMCGGDQTEGNTNRVVGTYGYMAPEYVTHGLFSTKSDVFSFGILLLEIVSGKKNREVTYPYHSHNLIGHAWRLWKQGIQNELIDTCLEDSCILLEALRCIHISLLCLQRQPDDRPNMAYVVMMLSSESDLPQPKEPGFLIDNIPNEEEYPFRNHTSSTNEVTISILDAR. 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03249 837 Gene3D Hepatocyte Growth Factor 338 419 - -
Seca12g03249 837 SMART blect_4 30 149 IPR001480 -
Seca12g03249 837 Pfam D-mannose binding lectin 72 175 IPR001480 -
Seca12g03249 837 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Seca12g03249 837 Gene3D Transferase(Phosphotransferase) domain 1 597 802 - -
Seca12g03249 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 146 - -
Seca12g03249 837 Pfam Protein tyrosine and serine/threonine kinase 522 791 IPR001245 GO:0004672|GO:0006468
Seca12g03249 837 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 180 IPR036426 -
Seca12g03249 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 597 800 - -
Seca12g03249 837 SMART serkin_6 521 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03249 837 CDD B_lectin 30 149 IPR001480 -
Seca12g03249 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 486 596 - -
Seca12g03249 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 421 - -
Seca12g03249 837 ProSiteProfiles Protein kinase domain profile. 521 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03249 837 ProSiteProfiles EGF-like domain profile. 288 324 IPR000742 -
Seca12g03249 837 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Seca12g03249 837 Pfam S-locus glycoprotein domain 209 322 IPR000858 GO:0048544
Seca12g03249 837 CDD STKc_IRAK 527 792 - -
Seca12g03249 837 Gene3D - 18 148 IPR036426 -
Seca12g03249 837 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 782 - -
Seca12g03249 837 Pfam PAN-like domain 339 407 IPR003609 -
Seca12g03249 837 Gene3D Phosphorylase Kinase; domain 1 483 596 - -
Seca12g03249 837 Pfam Domain of unknown function (DUF3403) 793 837 IPR021820 GO:0004674
Seca12g03249 837 SMART ntp_6 342 421 IPR003609 -
Seca12g03249 837 PIRSF SRK 1 837 IPR024171 GO:0004674
Seca12g03249 837 SUPERFAMILY Protein kinase-like (PK-like) 504 812 IPR011009 -
Seca12g03249 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Seca12g03249 837 CDD PAN_AP_plant 338 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03249 Seca-Chr12 66631589 66635476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03249 453 810 Receptor kinase-like Gene Family AT4G23230 54.294 1.68e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g03249 PK_Tyr_Ser-Thr 2.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03249 - - gmx:100794112 1268.83