Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03243 ATGGCACCAGATAACAATGATCAGCCACCACCAGTCTTCAGTGGCAAATTTAGTGTGATACTAATTGCAATGGGTTCAGCTAGTTTTGTGGTCACAATGTACCATCTCATAGTCATTTGCTGCCAACACTCAGCAGAAGCAAGGCGACAGAGGCATCTAGAACTGGTCACCACCGAAGCTGAGGCAACACCGAGCACTACCGGAGAGAACAATTCGGTGGCACACCTGATTCCAGCCCACAAGTATGAGAAGAAGAGTTGTGATGAATATGATGATGGCACTTGTGCTGTGTGCTTAGGTGACTTTGAGGAGGGTGAAGAGGTTAAGACGTTGCCCTTGTGTATGCACTCTTTCCTTGTACCATGCATAGATATGTGGTTCCATTCTCACTCTACCTGTCCTGTTTGCCGCGCTGATGCAACACCCTCGCCGGCACCCCATCAGTCGCCAGAGCTTGTTTCCGGCGAGGTGAATGCACATCACAGTATAGATATGATGCAAATAGCTCTCGTGCAAAATGGGTTGGTTCGGCGGTGA 537 0.4898 MAPDNNDQPPPVFSGKFSVILIAMGSASFVVTMYHLIVICCQHSAEARRQRHLELVTTEAEATPSTTGENNSVAHLIPAHKYEKKSCDEYDDGTCAVCLGDFEEGEEVKTLPLCMHSFLVPCIDMWFHSHSTCPVCRADATPSPAPHQSPELVSGEVNAHHSIDMMQIALVQNGLVRR. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03243 178 CDD RING-H2_EL5-like 95 137 - -
Seca12g03243 178 Pfam Ring finger domain 94 137 IPR001841 -
Seca12g03243 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 142 IPR013083 -
Seca12g03243 178 SUPERFAMILY RING/U-box 84 143 - -
Seca12g03243 178 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 142 IPR044675 -
Seca12g03243 178 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03243 Seca-Chr12 66352407 66352943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03243 19 149 C3H Transcription Factor Family AT5G17600 36.429 5.97e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03243 - - lja:Lj0g3v0111029.1 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03243 12 66352407 66352943 Seca12g03243 12 66352407 66352943 ECH