Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03241 ATGTCATCAATAAAAACCCCAAATATACACTTACAGTGTGAACTAAATATCTCCCTACCCAGACTTCGTATCAATGATCCAACCGTTCACAATGAAGAACCAGATGTTTCGAACCAGCTGTCAAACTTTCAGCCCGATCCAACGGTGAACGAATCTGCAGTCGCTATTTTACAGTCGCAGCTCTGTACTGAAAATGTAAATGTTACTAAGGATGGCGAGGATGTTGACATGGACGAGGCAGGAGACAATATAGAAATTAAGGCCGACATGAGGCAGGGGACTCATGTTTCATCCACACCCACTGATGTTAAGGCAATACCATCTAGTAGAATCAATTGTACAGCTCACATCACTGTGACCCTGCGCAAAGATGGGTTTTGGTACATCCAGAAATGTGTACATGAACATAATCATGACCTGAGTCCTGGAAAGTCGAGATTATTTGCCAACAATCGCAAGATGAGCTTGCATGTCAAGCGACTTATTGAATTAAACGATGAAGCAGGTGTGAGGATAAACAAGAGCTTCCGATCGCTAGTTTATGAAGCAGGAGGATATGAAAATGTCCCATTTGTTGAAAGAGACATACGAAATTATATGGGCCAAAAAAGACGGGCCCTCGGCAAAGACGGTGATGCTAAGGCCCTTCTAAGCTACTTCGCCAGAATGCAACAACAAAACTCAAATTTCTATTATGAAATAGACTTAGATGATGAAAGTCGGTTGAGACATGTATTTTGGGCAGATGCAAGGAGCAGGGCAAGTTATGAGTATTTTGGTGACGTTGTGTCATTTGACATCACATACCTCACCAATAAATATGACATGCCTTTTGCACCATTCATCGGGGTGAATCATCATGGCCAATCTATTTTACTTGGGCGTGGATTGTTATCGTCAGAAGAAACAATGTTCTTTGTTTGGTTGTTTGAGACCTGGCTTCGATGCATGGGTGGAAACCCTCCAGTGGGTATTGTGACAGACCAGTGCAAGGCAATGCAAATGGCCATTGAGATTGTATTTCCCACTACTCGACACAGATGGTGTTTATGGCACATCATGAAGAAAATTCCAGAAAAGTTGAAGAGTTATCTTCAATACAAGTCAATGAAGAATGAGTTAAAGTGTGTAGTGTACGACTCATTAAGTGAGGCTGAGTTTGAACCTGCATGGATGTCTTTTATGAACAAATATGGATTAGAGGGCAATGAATGGTTGTCGGGGTTGTACCATGATAGGTGCAAGTGGGTTCCTTGTTTCTTGAAGAAGCATTTTTGGGTAGGAATGTCAACCACACAGAGAAGTGAGAGTGTTAATACTTTTTTTGATGGATATATCAATGCATCGACAAACCTACAACAGTTTGTTAAACAGTATGAGAATGCTTTGCATCAAAAGTTTGAAAAGGAATATGAGGCATATTTCTGA 1428 0.4104 MSSIKTPNIHLQCELNISLPRLRINDPTVHNEEPDVSNQLSNFQPDPTVNESAVAILQSQLCTENVNVTKDGEDVDMDEAGDNIEIKADMRQGTHVSSTPTDVKAIPSSRINCTAHITVTLRKDGFWYIQKCVHEHNHDLSPGKSRLFANNRKMSLHVKRLIELNDEAGVRINKSFRSLVYEAGGYENVPFVERDIRNYMGQKRRALGKDGDAKALLSYFARMQQQNSNFYYEIDLDDESRLRHVFWADARSRASYEYFGDVVSFDITYLTNKYDMPFAPFIGVNHHGQSILLGRGLLSSEETMFFVWLFETWLRCMGGNPPVGIVTDQCKAMQMAIEIVFPTTRHRWCLWHIMKKIPEKLKSYLQYKSMKNELKCVVYDSLSEAEFEPAWMSFMNKYGLEGNEWLSGLYHDRCKWVPCFLKKHFWVGMSTTQRSESVNTFFDGYINASTNLQQFVKQYENALHQKFEKEYEAYF. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03241 475 Pfam MULE transposase domain 262 356 IPR018289 -
Seca12g03241 475 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 103 470 IPR031052 GO:0006355
Seca12g03241 475 Pfam FAR1 DNA-binding domain 103 141 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03241 Seca-Chr12 66297351 66300808 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g03241 MULE 1.1e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03241 - - psat:127087122 532.717