Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03235 ATGAAACAGCCATCAAAGCCATGGAGGCCATTAACAACAAACTGCTGCACAGTTGAGGACCAAACCATCCTTGGCAATTTCAGTCGCTACAAGCGCTCAACTTCAAATGTGTCCAAGGACAGTGTTTCTTCACCTTCTTCATTTCAGTGGCTGTTTTCCTCTGATCTTAGCCATTCCTCGTTCATAAGATCCAATGAGGATCTTGCAGAATCTTTTGTGTCGGATTTATATGATTTTGAGCTTAGTGAGCTTCGTGCAGTTACGCAGAATTTTTCAAGCAATTTCTTGCTGGGTAAAGGTGGATTTGGAACAGTTCATAAGGGTTATATAGATGGGAACTTGAGATGTGGTTTGAAAGCCCAACCTGTTGCTGTTAAGGTTCTCAACATTGAAGGCTTACAAGGACACCGTGAGTGGCTTGTAAGTATATATGCATCGCTTAGAACTTTTTATGTTGCAGAAGTGATATTTCTTGGGCAGCTAAGACACCAAAATCTGGTCAAATTGATTGGCTATTGTTGTGAGGATGAAGAAAGGCTACTCGTCTATCAATTCATGCCAAGGGGAAGCTTGGAGAATCACTTGTTCAGAAGAACAACATCACTACCATGGGCAACAAGACTAAAAATTATAGTAGGTGCAGCTAAAGGCCTTGCCTTCTTGCATGGATCTGAGAATCCAGTCATTTTCCGAGACCTCAAGACTTCAAACATCTTGCTTGATTCAGATTTCACAGCCAAACTGTCAGATTTTGGACTTGCAAAAATGGGGCCAGAGGGATCAAAGTCACATGTCACAACCAGAGTTATGGGCACTTATGGATATGCAGCCCCAGAATACATTTCCACAGGGCACTTGACAACAAAGAGTGATGTCTATAGCTTTGGGGTAATCCTGCTAGAACTGCTTACAGGAAGGAGAGCAGTGGACAAGAAAAGACCAAAGACTGAGCAAAACCTTGTGAATTGGTCAAGACCATACTTGAATAATAGCAAGAGGTTGCGGTGCATCATGGATCCAAGGCTTGCAGGACAATATTCTGTTAAGGGTGCAAAGGAGATGGCCCTTTTGGCATTGCAGTGCTTAAGTTTGAATCCTAAAGACAGGCCAAGAATGGTAACAGTTATTGAAACTCTTGAAAGCTTGCAACAGTTCAAGGACATGGCAGTTACACGTGGACACTGGCCGGCATCACCACAATATAGTACAAATAGACCATCCAATAAGGTGAAAATTGATCTTAGAGCAGGTGCAAACCACAGGAGGCTCTCTCCTCTTGTTTCAAACAGAACAACTTGA 1299 0.4265 MKQPSKPWRPLTTNCCTVEDQTILGNFSRYKRSTSNVSKDSVSSPSSFQWLFSSDLSHSSFIRSNEDLAESFVSDLYDFELSELRAVTQNFSSNFLLGKGGFGTVHKGYIDGNLRCGLKAQPVAVKVLNIEGLQGHREWLVSIYASLRTFYVAEVIFLGQLRHQNLVKLIGYCCEDEERLLVYQFMPRGSLENHLFRRTTSLPWATRLKIIVGAAKGLAFLHGSENPVIFRDLKTSNILLDSDFTAKLSDFGLAKMGPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVILLELLTGRRAVDKKRPKTEQNLVNWSRPYLNNSKRLRCIMDPRLAGQYSVKGAKEMALLALQCLSLNPKDRPRMVTVIETLESLQQFKDMAVTRGHWPASPQYSTNRPSNKVKIDLRAGANHRRLSPLVSNRTT. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03235 432 SUPERFAMILY Protein kinase-like (PK-like) 72 380 IPR011009 -
Seca12g03235 432 ProSitePatterns Protein kinases ATP-binding region signature. 97 126 IPR017441 GO:0005524
Seca12g03235 432 Gene3D Transferase(Phosphotransferase) domain 1 186 394 - -
Seca12g03235 432 FunFam Serine/threonine-protein kinase PBS1 186 394 - -
Seca12g03235 432 Pfam Protein tyrosine and serine/threonine kinase 97 379 IPR001245 GO:0004672|GO:0006468
Seca12g03235 432 ProSiteProfiles Protein kinase domain profile. 91 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03235 432 Gene3D Phosphorylase Kinase; domain 1 66 185 - -
Seca12g03235 432 SMART serkin_6 91 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03235 432 CDD STKc_IRAK 97 382 - -
Seca12g03235 432 PANTHER OS01G0588500 PROTEIN-RELATED 47 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03235 Seca-Chr12 66190237 66194411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03235 79 422 Glycoside Hydrolase AT3G07070 46.839 5.41e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca12g03235 Pkinase 7.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03235 - - gmx:100804970 662.914