Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03228 ATGGAATTCAAAAAGGCATTGAGTGTGATAGGCAACTCTCCATCTAACGGAATGTTTATAGACTCTTGCTATGTCCACTGCCAAACAGAATCACAAGAGACATGGTTCACAAGTGACTCTCCACAGCTTGCCAACAAAACAATTGCCGGGGCAGTAGGAGACTGGTTTTATGAACGAAGTCCTTTCCAGAAGATAGATTGCTCTTACCCTTGCAACCCAACTTGCTATAGCCCTGTTTTGGATGATTTTGAACCATAA 258 0.4264 MEFKKALSVIGNSPSNGMFIDSCYVHCQTESQETWFTSDSPQLANKTIAGAVGDWFYERSPFQKIDCSYPCNPTCYSPVLDDFEP. 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03228 85 PANTHER NOTUM-RELATED 2 76 IPR004963 GO:0016787
Seca12g03228 85 Pfam Pectinacetylesterase 2 61 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03228 Seca-Chr12 65938401 65938968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03228 2 80 Carbohydrate Esterase AT5G26670 48.101 1.03e-25 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03228 K19882 - gmx:100780707 134.42