Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03227 ATGGGATCCAATGGTAGCAAAGCCACTTCCTCTTGTAGTTCCTCTACTACTTCGTCTTCTTCAGGGAGTTTCAGGAAGGGTCGATCTAAGGGCCTTAGAGGTCTTCATTCTTTTTGTCTTGGAACAAGTTCTGGATCTCACGACAGTGATAATGAAGATCAGGCTTGTGATCAGAATAAAGTAAATGGCAGTGATATTGCATACACAGATGACAATGAAACAGATTCAGATGAGGTGAAAACAGAGTCTTTTAGAAAGGTTAAAGCTGGTGAGATGACTTGTATGCCTTCTAACATTGACCTAGAAGAATGGGGTGAAACAAGCATCCCCAACACTTCGTCCAGAACTGGCAGCAGCTCTGTCCATGCTTCTTCAACTCATTCCTTGAACCCTAGAAATCGATTGCTTTCTCGGTTTAGCCTCATTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCTCCAGTTTGGGATCATCAAGGCCTTGTCCTGTTTCTTCTGCAAGTCTCTCAATATTTGACAATGAAGACGAGCATAATATACATACAGGACCTTCTGGCAGTTTGATTAACACAAATGAAACTCAACAATGTAATGACTTGCATCCTACATCTTTTTTCACTCAAATACCTACACAGTGTCATGAAGATGCTTCTAATAATTTAAGGTCAAATGCCCCGGCATCAGGTTTGCCTAGCAACTTGCAGAGCAATCCCACAGGTGGAGATGGTACAAGAGGAGAACTGGATATAAATTTATTTTCTCCGAGAATTCAAGCAGAGACAGAAAATGTTGAGACTAGACATATGGGTCGACGAAATGGAGCTCGAGAGCCTGTTGAAAGGAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTTCGTCGATCAACATTATCCGACCTCAGCTTTTGCCCTCTGCAACAAGAGAGAGAACTGAGAGATGCTAGTCAGGATACAGGAAGGCAAGCAGTGGAGGGAGATTCAAGAGTGTCACCATCTGATAATAGTGCTCTTAATTCCTCTTCTACATCCGGATATCCTCTATCTAGTATGTCTAACTCCATGCTTAGTATCCAAGATTATGAAGTCGAGACTTCACGATCAAGAGAAGGAAGGTATCAGGATCTGCTGGAACATAGGTCCAATTTCCTTGAACGGAGAAGGAGAATACGGTCACAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTCTCTGGACATGACAGATCATGTATCTTATCTGGTCAACATAGAAATGGTCGTTGTACATGCCGAATCAGAAATCGTGACACTAATTCAAACGATGATACCAATGCGAGAGCTAGCATATCAAGAATTGTTATGCTTGCAGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCTTCCCATCCTTCTGTGTCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTGGAGTCCTTGCCCGTCAAACTATATGAGAAAAAACATAAGCAGCAAGAAGATGCTGCACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACTCTGTGCGAGTACTGCCTTGTCATCATGAATTTCATAAAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTATGTCGTGGGAACATCTGCATATCTGATTCATTGCCAACAGATAACTTAAGTGGCTAG 1725 0.4238 MGSNGSKATSSCSSSTTSSSSGSFRKGRSKGLRGLHSFCLGTSSGSHDSDNEDQACDQNKVNGSDIAYTDDNETDSDEVKTESFRKVKAGEMTCMPSNIDLEEWGETSIPNTSSRTGSSSVHASSTHSLNPRNRLLSRFSLIPGNISFRLSRTSSLGSSRPCPVSSASLSIFDNEDEHNIHTGPSGSLINTNETQQCNDLHPTSFFTQIPTQCHEDASNNLRSNAPASGLPSNLQSNPTGGDGTRGELDINLFSPRIQAETENVETRHMGRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDLSFCPLQQERELRDASQDTGRQAVEGDSRVSPSDNSALNSSSTSGYPLSSMSNSMLSIQDYEVETSRSREGRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRIRNRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSHPSVSSIGSVPAPNDVVESLPVKLYEKKHKQQEDAAQCYICLVEYEDGDSVRVLPCHHEFHKTCIDKWLKEIHRVCPLCRGNICISDSLPTDNLSG. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03227 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 478 562 IPR013083 -
Seca12g03227 574 Pfam Ring finger domain 515 558 IPR001841 -
Seca12g03227 574 MobiDBLite consensus disorder prediction 261 279 - -
Seca12g03227 574 MobiDBLite consensus disorder prediction 1 81 - -
Seca12g03227 574 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 570 - -
Seca12g03227 574 MobiDBLite consensus disorder prediction 316 357 - -
Seca12g03227 574 MobiDBLite consensus disorder prediction 104 129 - -
Seca12g03227 574 FunFam Putative RING zinc finger domain superfamily protein 485 563 - -
Seca12g03227 574 MobiDBLite consensus disorder prediction 216 247 - -
Seca12g03227 574 MobiDBLite consensus disorder prediction 327 357 - -
Seca12g03227 574 ProSiteProfiles Zinc finger RING-type profile. 516 558 IPR001841 -
Seca12g03227 574 MobiDBLite consensus disorder prediction 1 26 - -
Seca12g03227 574 MobiDBLite consensus disorder prediction 216 242 - -
Seca12g03227 574 MobiDBLite consensus disorder prediction 103 129 - -
Seca12g03227 574 MobiDBLite consensus disorder prediction 260 279 - -
Seca12g03227 574 SMART ring_2 516 557 IPR001841 -
Seca12g03227 574 SUPERFAMILY RING/U-box 494 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03227 Seca-Chr12 65915758 65922682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03227 34 565 C3H Transcription Factor Family AT5G45290 48.820 1.27e-122 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03227 - - gmx:100800896 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03227 12 65915758 65922682 Seca12g03227 12 65915758 65922682 ECH