Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03225 ATGAATCTTTCTTCATCCTTTTCCTACACCACATCCCTTCATGTGGTTCTTCTCTTCTCTGCCAGTTTACTATGTTTGCAACCTAAGAATAGTGCTACTGCTAGTGCCTTAGGAAATGACACAGACCAATTGTCATTGCTCAGATTCAAAGAAGCAGTAGTAGAAGACCCCTTTGATATTTTGACATCTTGGAATAGTTCAATTTACTTTTGCAATTGGCATGGAGTCACATGCAGCACCAGGCATAAAAGGGTCACTGCCCTGAACCTACAAGGGTATGCCTTAAGTGGGTTGATACCACCTGAGATTGGTAACCTCACCTTTCTGAGGTATGTCAACCTTCAAAACAACAGCTTCTATGGTGAAATTCCACAGGAAATAGGTCGTTTGTTCAGGCTGCAGGAGCTGTATCTCAACAATAACACATTAAGGGGTCAAATTCCCACCAATTTGTCTAACTGTTCTGAACTCAAGAGCTTGAGTTTAACAAGAAACAGACTTGTTGGCAAAATACCTATGGTGCTTGGGTTTCTAACTAAGCTAGAAATGTTATCTATTGCTATGAACAATTTGACAGGTGAAATCCCTGAATCTATAGGAAATCTTTCATCTCTTAGTATTCTCACTTTGGGAATCAATAACTTGGAGGGAAATGTACCAGAAGAGATAGGCTATCTGAAAAACTTGACCCATTTCTCTATTGCATCTAACAAACTATCTGGTATGCTTCCTTCTACACTCTTTAATATGTCATCTCTCACTTTCTTCTCAGCTGGAGCCAACCAATTTAATGGCTCTCTACCTGATAACATGTTCCTCACACTCCCTAATCTCCAACAATTTGGCATTGGTATGAATAAGATCTCAGGTCCTATCCCAGCTTCCATCTCCAATGCAACCAGTTTGCTGTTATTTAACATTCCTAGGAATAACTTTGTTGGACAAGTTCCAACTGGGATAGGAAACCTTAAAGATATCTGGTCCATTGCTATGGAAAGAAATCACCTAGGGAGTAATTCATCTAATGATTTAGATTTCTTGACATCTTTGACAAACTGCACCAACTTACAAGTGCTAGATTTAAATCTAAACAACTTTGGTGGTTCTTTACCCAATTCTGTAGCCAACTTTTCAAGTCAACTAAACCAGTTTTATATTGGTGGCAATCAGATTTCTGGGACTATTCCTTCAGGGTTAGGATATCTCATCAACTTGATTGGCTTGGACTTGGAGTTCAACCTTCTCACAGGGTCCATCCCAGCTTCTTTTGGGAGGTTTCAAAAGATGCAATCATTGACTTTAAATGTAAACAAACTTTCAGGAAAAATTCCATCTTCCATTGGCAATCTTAGTCAGTTGTTTCAACTTGACTTATCAAATAACATGCTGGAAGGAAGCATTCCTCCTAGTATTGGGAATTGCCAAAAGTTACAGTACCTTGACCTTTCACATAACAACCTTGTTGGAACTATTCCTTTGCTGGTCATTGGTCTTCCCTCCTTGTCATTGCTACTGAACTTATCCCATAACTCATTAAATGGAAGCCTACCCTTTGAAGTTGGCAACCTGAAAGGCATCAATAAGTTGGATGCTTCTAAAAATGATCTGTCTGGTGAAATTCCTTCAACAATTGGACAGTGCATAAGCTTGGAATACCTTAACTTACAAGGGAATTCCTTCCATGGAGCCATACCTTCATCCTTGGCTTCATTGAAAGGCCTTCAGTATTTAGATTTGTCACAAAACAACTTGTCTGGATCAATTCCTGAAGGTCTAGAGGATATTCCTGTTCTACAGTACTTGAATATGTCATTTAACAGGTTGGATGGTGAAGTACCAAAAGAAGGTGTCTTTAGAAATGCAAGTGCAATATCAGTAGAAAGCAACAGTGACCTTTGTGGGGGTATCACAGAGCTACATCTACCATCATGCCCTGTCAAAGATAAGACACACAAAAAACATCAGACTTGGAAGGTAATAGTAATAATAATTTCTGTGGGTTTCTTTCTTCTACTGTTATCATTCTCTATTATTTTCTTTTGGAAGAAGAAAACAAAGAGAACACCAACTTCATCACCAACAATGGACCATCTTGCCAAGGTCTCATACCAGACACTCCACCAAGCAACAAATGGATTCTCTCCCAACAACTTGATAGGATCTGGTGCTTTTGGCTTTGTATATAAAGGAACTATTGAGTCAGAAGAAAGACCTGTTGCTATAAAGGTCCTGAACCTTCGAAACAAAGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTCAGAAACATCCGTCACAGAAACCTGGTTAGGATTATAACATGTTGCTCAAGTATGGATTACAATGGAAATGAATTCAAAGCCTTAGTTTTTGAGTACATGGAGAATGGAAGCTTGGAGAAATGGTTGCATCCTGAGTCAGAAATTGGAGATCAACCAAGTGTGAATCTTCTTCAAAGACTAAATATTCTCATAGATATTGGTTCTGCACTACACTATCTTCACTGTGAGTGTGAGCAGCCAATTGTTCACTGTGATGTAAAGCCATGCAATGTCCTTCTTGATAATGACATGGTTGCTCATGTGAGTGATTTTGGACTAGCAAGACTTCTTTGTGTCATCAATGGCATCTCTGATCTGAAAACAAGCACAATTGGAATCAAGGGAACTGTTGGGTATGCTCCTCCAGAGTATGGAATGGGAGGTCAAGTTTCAACACTAGGTGATGTGTATAGTTTTGGAATCCTTATACTGGAAATACTAACTGGAAGGAAACCCACAGATGAAATGTTTACAAATGGAATGAATCTCCATACTTTTGTCAAGGTTTCCTTGCCAGATAAACTCCTACAAATAGTGGACTCAACCCTGCTTCCAAGAGAATTGATACAAACAGCTCTATCAGCAGAAGAAGATAACAATAGTGATCAGAACCTGAGCCAGATGGATCCTAGTGATCTGAATAAGTGCTTACTTGATCTGTTTTACATTGGACTTGCTTGTTCTGCAGAGTCTCCAAGAGAAAGAATGAATATGAAGGATGTCACCAGGGAATTAGATCTAATCAGAAATGCTCTTTCTCGGAGGAGACTGATCTAA 3102 0.3917 MNLSSSFSYTTSLHVVLLFSASLLCLQPKNSATASALGNDTDQLSLLRFKEAVVEDPFDILTSWNSSIYFCNWHGVTCSTRHKRVTALNLQGYALSGLIPPEIGNLTFLRYVNLQNNSFYGEIPQEIGRLFRLQELYLNNNTLRGQIPTNLSNCSELKSLSLTRNRLVGKIPMVLGFLTKLEMLSIAMNNLTGEIPESIGNLSSLSILTLGINNLEGNVPEEIGYLKNLTHFSIASNKLSGMLPSTLFNMSSLTFFSAGANQFNGSLPDNMFLTLPNLQQFGIGMNKISGPIPASISNATSLLLFNIPRNNFVGQVPTGIGNLKDIWSIAMERNHLGSNSSNDLDFLTSLTNCTNLQVLDLNLNNFGGSLPNSVANFSSQLNQFYIGGNQISGTIPSGLGYLINLIGLDLEFNLLTGSIPASFGRFQKMQSLTLNVNKLSGKIPSSIGNLSQLFQLDLSNNMLEGSIPPSIGNCQKLQYLDLSHNNLVGTIPLLVIGLPSLSLLLNLSHNSLNGSLPFEVGNLKGINKLDASKNDLSGEIPSTIGQCISLEYLNLQGNSFHGAIPSSLASLKGLQYLDLSQNNLSGSIPEGLEDIPVLQYLNMSFNRLDGEVPKEGVFRNASAISVESNSDLCGGITELHLPSCPVKDKTHKKHQTWKVIVIIISVGFFLLLLSFSIIFFWKKKTKRTPTSSPTMDHLAKVSYQTLHQATNGFSPNNLIGSGAFGFVYKGTIESEERPVAIKVLNLRNKGAHKSFIAECNALRNIRHRNLVRIITCCSSMDYNGNEFKALVFEYMENGSLEKWLHPESEIGDQPSVNLLQRLNILIDIGSALHYLHCECEQPIVHCDVKPCNVLLDNDMVAHVSDFGLARLLCVINGISDLKTSTIGIKGTVGYAPPEYGMGGQVSTLGDVYSFGILILEILTGRKPTDEMFTNGMNLHTFVKVSLPDKLLQIVDSTLLPRELIQTALSAEEDNNSDQNLSQMDPSDLNKCLLDLFYIGLACSAESPRERMNMKDVTRELDLIRNALSRRRLI. 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03225 1033 Gene3D Ribonuclease Inhibitor 335 653 IPR032675 -
Seca12g03225 1033 ProSiteProfiles Protein kinase domain profile. 713 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03225 1033 SMART serkin_6 713 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03225 1033 FunFam LRR receptor-like serine/threonine-protein kinase EFR 342 650 - -
Seca12g03225 1033 PRINTS Leucine-rich repeat signature 477 490 - -
Seca12g03225 1033 PRINTS Leucine-rich repeat signature 571 584 - -
Seca12g03225 1033 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 795 1032 - -
Seca12g03225 1033 SMART LRR_sd22_2 178 204 - -
Seca12g03225 1033 SMART LRR_sd22_2 226 252 - -
Seca12g03225 1033 SMART LRR_sd22_2 130 156 - -
Seca12g03225 1033 SMART LRR_sd22_2 571 594 - -
Seca12g03225 1033 SMART LRR_sd22_2 450 482 - -
Seca12g03225 1033 Gene3D Ribonuclease Inhibitor 38 334 IPR032675 -
Seca12g03225 1033 FunFam LRR receptor-like serine/threonine-protein kinase EFR 684 794 - -
Seca12g03225 1033 Gene3D Transferase(Phosphotransferase) domain 1 795 1031 - -
Seca12g03225 1033 SUPERFAMILY L domain-like 41 336 - -
Seca12g03225 1033 Gene3D Phosphorylase Kinase; domain 1 694 794 - -
Seca12g03225 1033 PANTHER UNNAMED PRODUCT 347 931 - -
Seca12g03225 1033 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 199 274 - -
Seca12g03225 1033 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 39 198 - -
Seca12g03225 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Seca12g03225 1033 SMART LRR_typ_2 595 620 IPR003591 -
Seca12g03225 1033 SMART LRR_typ_2 226 250 IPR003591 -
Seca12g03225 1033 SMART LRR_typ_2 178 202 IPR003591 -
Seca12g03225 1033 SMART LRR_typ_2 571 594 IPR003591 -
Seca12g03225 1033 SMART LRR_typ_2 130 154 IPR003591 -
Seca12g03225 1033 SMART LRR_typ_2 402 425 IPR003591 -
Seca12g03225 1033 SMART LRR_typ_2 450 474 IPR003591 -
Seca12g03225 1033 Pfam Leucine rich repeat 549 608 IPR001611 GO:0005515
Seca12g03225 1033 Pfam Leucine rich repeat 428 487 IPR001611 GO:0005515
Seca12g03225 1033 SUPERFAMILY Protein kinase-like (PK-like) 687 1020 IPR011009 -
Seca12g03225 1033 Pfam Protein kinase domain 716 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03225 1033 SUPERFAMILY RNI-like 285 615 - -
Seca12g03225 1033 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Seca12g03225 1033 ProSitePatterns Protein kinases ATP-binding region signature. 719 742 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03225 Seca-Chr12 65890234 65893450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03225 39 1024 Receptor kinase-like Gene Family AT3G47570 46.647 0.0 846
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca12g03225 Pkinase 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03225 - - aprc:113870110 1167.14