Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03220 ATGGTAGGTCAAGAGTTCACCAGGGATTTGGAAGATGCTGGAAGCTTATTGTTAATAATAGTTTATGTTAAGAAAATAATACAAGGCTACATCCTGCAATTTGCGCTTGGTTCATGGGATAACTATTTCTTACCTGGTGGTGGTCAACGTTCACAGGTCTGTAAACTTCAATACATAGCTGAACTGGAAAGAAATGTACAGGGTTTACAGGCAGAAGGGTCTGAAGTATCAGCTGAGCTTGAATTTCCTAACCAGCAACATCTTATCCTAAGTATGGAGAATAAAGCTCTCAAGCAACGGTTAGAAAGTTTAGAACAAGAACAGCTTATGAATACTGTAAGTTTCTATCACTGA 354 0.3842 MVGQEFTRDLEDAGSLLLIIVYVKKIIQGYILQFALGSWDNYFLPGGGQRSQVCKLQYIAELERNVQGLQAEGSEVSAELEFPNQQHLILSMENKALKQRLESLEQEQLMNTVSFYH. 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03220 117 Coils Coil 87 107 - -
Seca12g03220 117 CDD bZIP_plant_RF2 48 87 IPR044759 GO:0003700|GO:0006355
Seca12g03220 117 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 48 112 IPR044797 -
Seca12g03220 117 Coils Coil 59 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03220 Seca-Chr12 65715055 65717923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03220 47 109 bZIP Transcription Factor Family AT2G42380 52.381 2.04e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03220 - - sind:105169115 102.449