Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03216 ATGATTAAAGTGGAAGCTTATACAGATCCTATATTTGATTCTGAGTGTGATGGTAGTGTTAGTATTAGTGTGGAGGATAGTGAATTGTCTGAGAAGAATCAAAAAGTTGACATTGGTGTTGGAGAAGGTCAGTTTAGAAAGATTTTTGACCTAACTGCTGATGAATTTCGCTGCCTTGAGTTTGGCAGTGAAGAAGAAGCCTATCATTATTATAAGTTATATGCAAAATTTCATGGATTTGTGGTTAGAAAAGATGATGTAACAAAGGATATTAGGGGTAATATTATTATGCGTCAGTTTGTTTGCAATAGGGAGGGTTTAAGGAAGAAGAAGCACCTTATGAGGGTGGATAGGAAGAGAGAGCATAGGCCACTTACCCGTACAAACTGCCAAGCTAAGCTTCGTATACACTATGATTACAAGATTTTTAAATGGATAGTTGTGTCCTTTGAGGAGTGTCATAACCATGAACTTACCCCATCAAGATATGTTCAATTACATTCTGCTTATCGTAGTTTGACAGATGGGGATAAGGCCCCGGTTGACATTTTGCATGCATATGGTGTTAGAAGTTGTCACATCATGGGGTACCTAGTAGCTCAGAAAGGGGGATATGGTCGAGTTGGTTTTACAAAGAAGGACATGTACAATTATCTTGACCGTAAAAATCAAGCAAAGATTAAGAAAGGGGATGTACGTGTTGGTTTGAGATCTACAGGGTGTGATTATCAATGCTTTGGTGATGTTCTTGCTTTTGATACCACTTACAAGAAGAACAAGTACAATTATCCTGTTGTTATATTCTCTAGATGCAATCACCATTCTCAAACTGTAATTTTTGGATGTGCTTTGGTTTCAGATGAAACAACTGAAACTTATAAGTGGGTTTTAAAAGCTTTTTTGGAAGCAATGGGAAAGAGACAACCAAAAGCAGTTATAACAGATGGTGATGCTGCAATGAGGGAAGCGATAAAACAAGTGTTTCCAGAATCATGTCATCGATTGTGTGCATGGCACCTACATAATAATGCCTGTGATAATGTGAAAAATTCTGCGTTCTTGCAGGATTTCAAGACAACAATGTACTCCAATTTCAACCCAGATGAATTTGAGGAGTATTGGAAGAAAATTGTTGATGAACATGGTGGTTGTTCAAGTGTAGCTAGGCCTGAAATTTCTCAAGGGCTGGCTTTTTTCCCCCCATTGCACATTACTTCAGTTAGTTATGACAACTACAGTCAAGGTTGTTCAATAGTACCTAATGCTACGAGTCATCATATTCAATGTCAAAATCCCCCAATTCCAGTTTACACTCAGAATACCCAGATTCCGGTTTTCCACCCAAATTTACAAGTGCCAAACTTTGCTCAAGTTCCTCAGTATTTTTCTGGAGTATGGAATACTGCAAATAATGCCACCCCTTGGCATAATTTGCTACAGCAAGTTATGAATGGTGGGGGTAATCTGAGTAAGATTCTAAATACTTTTCCAAATTAG 1497 0.3794 MIKVEAYTDPIFDSECDGSVSISVEDSELSEKNQKVDIGVGEGQFRKIFDLTADEFRCLEFGSEEEAYHYYKLYAKFHGFVVRKDDVTKDIRGNIIMRQFVCNREGLRKKKHLMRVDRKREHRPLTRTNCQAKLRIHYDYKIFKWIVVSFEECHNHELTPSRYVQLHSAYRSLTDGDKAPVDILHAYGVRSCHIMGYLVAQKGGYGRVGFTKKDMYNYLDRKNQAKIKKGDVRVGLRSTGCDYQCFGDVLAFDTTYKKNKYNYPVVIFSRCNHHSQTVIFGCALVSDETTETYKWVLKAFLEAMGKRQPKAVITDGDAAMREAIKQVFPESCHRLCAWHLHNNACDNVKNSAFLQDFKTTMYSNFNPDEFEEYWKKIVDEHGGCSSVARPEISQGLAFFPPLHITSVSYDNYSQGCSIVPNATSHHIQCQNPPIPVYTQNTQIPVFHPNLQVPNFAQVPQYFSGVWNTANNATPWHNLLQQVMNGGGNLSKILNTFPN. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03216 498 Pfam MULE transposase domain 249 343 IPR018289 -
Seca12g03216 498 PANTHER OS01G0519700 PROTEIN 59 381 - -
Seca12g03216 498 Pfam FAR1 DNA-binding domain 70 159 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03216 Seca-Chr12 65684781 65686581 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g03216 MULE 1.9e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03216 - - ccaj:109792835 498.434