Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03208 ATGGAGTCAAATAATGAAATTCATCCATTCATGACAATGCCTAGAATAGAAGATTTCTTAGACTTTCAAATAGAGACTCAAGATTCCTCTTCACTCAACCAGATGTATAATCATGGGTTTATCCCTATCCATTTCAACAACCAACAAGATCTGGAAACTACCAACTCGGGCTTTCAGTTGGATGACTCGGTCTCTAACACCAAAACTCATGTTGCTACTCCTGCGGAATTGGGAAAAGTGTCTTATGTTGATAAGGCTGTTGCTATGGTGGATTCTGATGCCTCAAAGAAAATTACACACACTGTTGTCAAAAGGACTTCTATTTACAGAGGAGTTACAAGGCATCGATGGACAGGTAGATATGAGGCACATTTGTGGGATAATAAGAGCAAAAAAGAGGGCCAGACCAAGATAGGGCGTCTAGGTGGGTATGATAACGTAGAAAAGGCCGCGAGAGCTTATGATTTAGCAGCTCTAAAATATTGGAGACAAAAAGCCACAACTAACTTTCCTGTTTCCAATTATGCAAAGGAATTGGAGGAGATGGAAAATGTAGGAAAGCAGGAATATATTACATCATTGAGAAGGAATAGCAGTGCCTTTTCAAGGGGAGTTTCCATATATAGAGGTGTTTCAAGGCACCGCAGAGTTGGTAAATGGCAAGCAAAGATTAGCAGTGTTGTAGGACACAAAGATCTATACTTGGGAACATTTGACAGTGAAGAGGAAGCGGCAGAGGCATATGACATTGCGGCCATCAAATTTAGAGGTGCAAACACTGTAACCAATTTTGAGATAAGTAGATATGATGTGGAAGCTATATCGAGTAGTACTATACTAGTTGGTGGGGCAACAAAAAAGATGAGGTTTTCTAAAGAATTAGAGAAGATAGCTCCTATGACTAGTGGTCATGAAACTCATAGCTCAAATGTGAGTAGTACCATCGATATCCCAACCATTCAGCCACTTGCTGCTATACCAAATGATTCTGCAACAACTTTTTATCCCCCAAACCCGTACCACCTAATTCATCCTACCAACCAATTTCATCCTACCAATGATGGCAGTGGCACAATAGAGCCTTCTGGAACTGCAACTAATGCAGCCACATTCAATGAACTGGAAAAAGTGGTTGGGTTCTATATGCAACCTCATCAGTCCTACTGA 1167 0.407 MESNNEIHPFMTMPRIEDFLDFQIETQDSSSLNQMYNHGFIPIHFNNQQDLETTNSGFQLDDSVSNTKTHVATPAELGKVSYVDKAVAMVDSDASKKITHTVVKRTSIYRGVTRHRWTGRYEAHLWDNKSKKEGQTKIGRLGGYDNVEKAARAYDLAALKYWRQKATTNFPVSNYAKELEEMENVGKQEYITSLRRNSSAFSRGVSIYRGVSRHRRVGKWQAKISSVVGHKDLYLGTFDSEEEAAEAYDIAAIKFRGANTVTNFEISRYDVEAISSSTILVGGATKKMRFSKELEKIAPMTSGHETHSSNVSSTIDIPTIQPLAAIPNDSATTFYPPNPYHLIHPTNQFHPTNDGSGTIEPSGTATNAATFNELEKVVGFYMQPHQSY. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03208 388 Pfam AP2 domain 207 257 IPR001471 GO:0003700|GO:0006355
Seca12g03208 388 Pfam AP2 domain 108 163 IPR001471 GO:0003700|GO:0006355
Seca12g03208 388 CDD AP2 206 267 IPR001471 GO:0003700|GO:0006355
Seca12g03208 388 CDD AP2 107 173 IPR001471 GO:0003700|GO:0006355
Seca12g03208 388 ProSiteProfiles AP2/ERF domain profile. 108 171 IPR001471 GO:0003700|GO:0006355
Seca12g03208 388 Gene3D AP2/ERF domain 108 173 IPR036955 GO:0003700|GO:0006355
Seca12g03208 388 Gene3D AP2/ERF domain 207 267 IPR036955 GO:0003700|GO:0006355
Seca12g03208 388 ProSiteProfiles AP2/ERF domain profile. 207 265 IPR001471 GO:0003700|GO:0006355
Seca12g03208 388 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Seca12g03208 388 PRINTS Ethylene responsive element binding protein signature 247 267 IPR001471 GO:0003700|GO:0006355
Seca12g03208 388 SUPERFAMILY DNA-binding domain 206 267 IPR016177 GO:0003677
Seca12g03208 388 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 68 301 - -
Seca12g03208 388 SMART rav1_2 207 271 IPR001471 GO:0003700|GO:0006355
Seca12g03208 388 SMART rav1_2 108 177 IPR001471 GO:0003700|GO:0006355
Seca12g03208 388 SUPERFAMILY DNA-binding domain 107 173 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03208 Seca-Chr12 65420453 65424147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03208 8 388 AP2-EREBP Transcription Factor Family AT5G65510 44.098 1.57e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca12g03208 AP2 7.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03208 K09285 - gmx:100795280 358.221