Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03207 ATGGAGTCAAGTAATGAAATTCAGCCATTCATGACAATGCCTAGAATGGAAGATTTCTTAGACTTTCAAATAGAGACTCAAGATTCCTCTTCACTCAACCAGATGTACAATCATGGGTTTATCCCTATCCATTTCAACAACCAACAAGATCTGGAAACTACCAACTCGGGCTTTGAGTTGGATGACTCGGTCTCTAACACCAAAACTCATGTTGCTACTCCTGCAGAATTGGGAAATGTGTCTTATGATGATAAGGTTGTTGTTATGGTGGATTCTGATGCCTCAAAGAAAATTACACACACTATTGGCAAAAGGACTTCTATTTACAGAGGAGTTACAAGGCATCGATGGACAGGAAGATATGAGGCACATTTGTGTGATAATAAGTGCAAAAAAGAGGGCCAGACCAAGATAGGGCGTCTAGGTGGGTATGATAACGAAGAAAAGACCGTGAGAGCTTATGATTTAGCAACTCTAAAATATTGGGGACAATCAACCACCACTAACTTTCCTGTTTCCAATTATGCAAAGGAATTGGAGGAGATGCAAAATGTAGGAAAACAGGAATATATTACATCATTGAGAAGAAATAGCAGTGCTTTTTCACGGGGAGTTTCCATATATAGAGGTGTTTCAAGTGAAGAGGAAGCGACAGAGGCATGTGACATTGCGGCCATCAAGTTTAGAGGTGTAAACACTGTAACTAATTTTGAGATAAGTAGATATGATGTGGAAGCTATATCGAGTAGTACTCTTCCAGTTGGTGGGGCAACAAAAAAGATGAGGTTTTCTAAAGAATTAGAGAAGATAGCTCCTATGACTAGTGGTCATGAAACTCATAGCTCAAATATGAGTAGTACCATCCATATCCCAACCATTCAGCCACTTGCTGCTATACCAAATGATTCCGCAACAACTGTCTATCACCCAAAGCCGTACCACCTAATTCATCCTACCAACCAATTTCATCCTACCAATGATTGCAGTGGCACAATAGATCCTTCTGGAACCGCAACTAATGCAGCCACATTCAATGAACTGGAAAAAGTGGTTGGGTTCTATATGCAACCTCATCAGTCCTACTGA 1086 0.4033 MESSNEIQPFMTMPRMEDFLDFQIETQDSSSLNQMYNHGFIPIHFNNQQDLETTNSGFELDDSVSNTKTHVATPAELGNVSYDDKVVVMVDSDASKKITHTIGKRTSIYRGVTRHRWTGRYEAHLCDNKCKKEGQTKIGRLGGYDNEEKTVRAYDLATLKYWGQSTTTNFPVSNYAKELEEMQNVGKQEYITSLRRNSSAFSRGVSIYRGVSSEEEATEACDIAAIKFRGVNTVTNFEISRYDVEAISSSTLPVGGATKKMRFSKELEKIAPMTSGHETHSSNMSSTIHIPTIQPLAAIPNDSATTVYHPKPYHLIHPTNQFHPTNDCSGTIDPSGTATNAATFNELEKVVGFYMQPHQSY. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03207 361 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 212 283 - -
Seca12g03207 361 ProSiteProfiles AP2/ERF domain profile. 108 171 IPR001471 GO:0003700|GO:0006355
Seca12g03207 361 CDD AP2 107 173 IPR001471 GO:0003700|GO:0006355
Seca12g03207 361 SMART rav1_2 108 177 IPR001471 GO:0003700|GO:0006355
Seca12g03207 361 SMART rav1_2 195 244 IPR001471 GO:0003700|GO:0006355
Seca12g03207 361 Pfam AP2 domain 108 163 IPR001471 GO:0003700|GO:0006355
Seca12g03207 361 SUPERFAMILY DNA-binding domain 107 173 IPR016177 GO:0003677
Seca12g03207 361 Gene3D AP2/ERF domain 108 173 IPR036955 GO:0003700|GO:0006355
Seca12g03207 361 Gene3D AP2/ERF domain 184 240 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03207 Seca-Chr12 65384411 65388091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03207 13 361 AP2-EREBP Transcription Factor Family AT5G65510 39.278 2.75e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g03207 AP2 7e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03207 K09285 - twl:119995400 316.235