Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03206 ATGCATGGGCACGTAGTCTCCATCAGTAACTACATCTCAGACATCAATGTTGTTGCTTTCAATAAACAACTTCATACGATCCCTCCAATAGTGGTAATCCACTCCATTGAATGCTGGGGGTCTCGTGATAGAGGCTCCTTCAGTGATATACTGTCTGTTGCTGGAGACATTGAGACACACTCTGTCCAACACGTTCTGAGTAGTCTTAGGTGCAGCAGGTCTGCGCACACAATGCTTTTGAGCAGCCTTCAAATGCAAGGAGTGCTTCAAATGATCTTCAAGTCTTCAGATGATAAACACTATTCAGATGAAGTTGATCTTTCAGATGATCCTTTACACAGACAATATGATCTGAAACAGTGCAACACCCTTGAAGAGGAAGCGGCAGAGGCATATGACATTGCGGCCATCAAGTTTAGAGGTGTAAACACTGTAACCAATTTTGAGATAAGTAGATATGATGTGGAAGCTATATCGAGTAGTACTCTTCCAGTTGGTGGGGCAACAAAAAAGATGAGGTTTTCTAAAGAATTAGAGAAGATAGCTCCTATGACTAGTGGTCATGAAACTCATAGCTCAAATGTGAGTAGTACCATCAATATCCCAACCATTCAGCCACTTGCTTCTACACCAAATGATTCTGCAACAACTTTTTATCACCCAAACCCGTACACCTAA 678 0.4189 MHGHVVSISNYISDINVVAFNKQLHTIPPIVVIHSIECWGSRDRGSFSDILSVAGDIETHSVQHVLSSLRCSRSAHTMLLSSLQMQGVLQMIFKSSDDKHYSDEVDLSDDPLHRQYDLKQCNTLEEEAAEAYDIAAIKFRGVNTVTNFEISRYDVEAISSSTLPVGGATKKMRFSKELEKIAPMTSGHETHSSNVSSTINIPTIQPLASTPNDSATTFYHPNPYT. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03206 225 Gene3D AP2/ERF domain 100 151 IPR036955 GO:0003700|GO:0006355
Seca12g03206 225 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 124 182 - -
Seca12g03206 225 SMART rav1_2 112 155 IPR001471 GO:0003700|GO:0006355
Seca12g03206 225 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03206 Seca-Chr12 65378025 65380744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03206 125 220 AP2-EREBP Transcription Factor Family AT5G57390 48.000 5.41e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03206 K09285 - sind:105176383 103.605