Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03205 ATGGAGTCAAATAATGAAATTCAGCCATTCATGACAATGCCTAGAATGGAAGATTTCTTAGACTTTCAAATAGAGACTCAAGATTCCTCTTCACTCAACCAGATGTATAATCATGGGTTTATCCCTATCCATTTCAACAACCAACAAGATTTGGAAACTACCAACTCGGGCTTTCAGTTGGATGACTCGGTCTCTAACACCAAAACTCATGTTGCTACTCCTGCGGAATTGGGAAATGTGTCTTATGATGATAAGGCTGTTGTTATGGTGGATTCTGATGCCTCAAAGAAAATTACACACACTGTTGGCAAAATGACTTTTATTTACAGAGGAGTTACAAGGCGTCGATGGACAGGTGGGTATGATAACGAAGAAAAGGCCACGAGAGCTTATGATTTAGCAGCTCTAAAATATTGGGGACAATCAGCCACCACTAACTTTCCTGTTTCCAATTATGCAAAGGAATTAGAGGAGACGGAAAATGTAGGAAAGCAGGAATATATTACATCATTGAGAAGGTTTGTAGACCTGTCTAATGGCATAACACTAAACTTAAGGGCTGGAATTAAATAA 573 0.3892 MESNNEIQPFMTMPRMEDFLDFQIETQDSSSLNQMYNHGFIPIHFNNQQDLETTNSGFQLDDSVSNTKTHVATPAELGNVSYDDKAVVMVDSDASKKITHTVGKMTFIYRGVTRRRWTGGYDNEEKATRAYDLAALKYWGQSATTNFPVSNYAKELEETENVGKQEYITSLRRFVDLSNGITLNLRAGIK. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03205 190 SUPERFAMILY DNA-binding domain 113 150 IPR016177 GO:0003677
Seca12g03205 190 Gene3D AP2/ERF domain 110 150 IPR036955 GO:0003700|GO:0006355
Seca12g03205 190 ProSiteProfiles AP2/ERF domain profile. 83 148 IPR001471 GO:0003700|GO:0006355
Seca12g03205 190 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 57 173 - -
Seca12g03205 190 CDD AP2 108 150 IPR001471 GO:0003700|GO:0006355
Seca12g03205 190 SMART rav1_2 108 154 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03205 Seca-Chr12 65335472 65338012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03205 13 173 AP2-EREBP Transcription Factor Family AT5G65510 36.948 1.33e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03205 K09285 - jre:108990656 154.451