Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03175 ATGCCACAAACATGCATAATAGCACCCAAACCAGAACCAGAACACAGCATGAATCACCCTGTGGAAGGGTCACAAGAGATGACTGAGTACCATAACTCAACTGTCCTTTCCTACCCCATACAAACTAATGACCAATCTTTCCAAAAACTCACTATGTACCCCATAACTTTGAAGTTTGAGGAATTGGTGTACAAAGTTAAATTAGAGCAGAAGGGTCTTTGTTGGGGTAGCAGAGGGACTTGCAGAGAGAAGACCATATTGAATGGTGTTTCAGGTATGGTTTTCCCAGGTGAAATACTGGCTATGTTGGGGCCATCTGGAAGTGGCAAAACCACACTTCTCACAGCACTTGGAGGACGTCTGAGTGGCAAATTATCTGGAAAGATAACATACAACAATCAGCCTTTCTCAGGTACCATGAAAAGAAGAACAGGTTTTGTGGCCCAAGATGATGTGTTATACCCTCATCTCACAGTAATTGAGACTCTAGTCTTCACTGCACTTTTAAGGCTGCCTAATAGTTTGACCAGGTATGAGAAAGTTCAACATGTAGAGAATGTCATCAATGAGCTAGGACTGACAAGGTGCAGGAATAGCATGATTGGAGGCCCACTTTTCAGAGGAATATCAGGTGGAGAGAAAAAGAGGGTGAGTATAGGCCAGGAAATGCTCATTAATCCAAGTCTCTTGCTGTTAGATGAGCCCACTTCAGGTTTGGACTCAACAACAGCACAAAGGATACTCAACACAATCAAATGCCTTGCTAGTGGGGGGAGAACTGTTGTCACTACCATTCATCAACCTTCTAGTCGTCTCTACCATATGTTTGATAAGGTGGTCTTGCTCTCAGAAGGGTGCCCCATCTATTATGGCCCTGCTTCAACTGCCATGGAGTACTTTTCTTCAATTGGTTTTTCCACACCCATGACTGTCAATCCAGCTGATTTGTTGCTTGATCTTGCTAATGGGATTGCCCCAGATTCCAAGCATGCAACTGAACAAAGTGAGAGCCAGGAACCAGAAAGGAAGTTGGTGAGAGAAACCCTTGTCTCTGCCTATGAAAAGAACATAGCTACAAGGCTGAAGGCTGAGTTTTGCAGCTTGGAGGTGAACAACTACAACATCACCAAAGATGCTTCTGCAAGAAATCATGTAAAACCAGAACAATGGTGCACAAGTTGGTGGCATCAGTTTAAAGTACTGTTGCAGAGGGGACTCAGGGAGAGAAGGTACGATGCCTTCAACAGGCTGAGAATATTCCAAGTCATAAGTGTTGCTTTTCTTGGTGGACTCCTGTGGTGGCAAACACCAGAATCTCACATTGGAGACCGTGTAAGAATTTCTTCATTGCAGATAGCCCTGCTCTTTTTCTTCTCTGTTTTCTGGGGATTCTACCCTCTCTACAATGCTGTTTTTACATTTCCTCAAGAGAGAAGAATGCTGATAAAGGAAAGGTCATCAGGGATGTACCGTCTCTCTTCCTATTTTCTAGCTAGAACAATAGGTGACTTGCCATTGGAGCTTGCACTTCCAACTGCATTTGTCTTCATAATCTATTGGATGGGAGGGCTTAAACCTCATCCTATGACCTTTATCCTTTCCCTTTTTGTGGTTCTTTACAGTGTCCTTGTTTCTCAAAGTCTTGGCTTAGCATTTGGTGCTATTTTGATGGAAGTTAAACAAGCAACTACTTTAGCTTCTGTGACAACACTTGTATTTCTCATTGCTGGAGGGTACTACATACAACAGATTCCTCCTTTCATAGAATGGCTCAAGTACTTAAGCTATAGCTACTATTGTTACAAGCTTCTTCTTGGGGTGCAGTACAATGATGATGATTATTATGAGTGCTCAAAAGGGGTCCTGTGCAAGGTTGGAGATTTTCCTCCTATTAAATCAATGGGTTTGAATCATATGTGGGTTGATGTGTTCATTATGGCCTTGATGTTGGTGGGTTATAGACTAGTTGCTTATTTAGCACTGCAGAGAGTGAGGTAG 1998 0.4279 MPQTCIIAPKPEPEHSMNHPVEGSQEMTEYHNSTVLSYPIQTNDQSFQKLTMYPITLKFEELVYKVKLEQKGLCWGSRGTCREKTILNGVSGMVFPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNNQPFSGTMKRRTGFVAQDDVLYPHLTVIETLVFTALLRLPNSLTRYEKVQHVENVINELGLTRCRNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILNTIKCLASGGRTVVTTIHQPSSRLYHMFDKVVLLSEGCPIYYGPASTAMEYFSSIGFSTPMTVNPADLLLDLANGIAPDSKHATEQSESQEPERKLVRETLVSAYEKNIATRLKAEFCSLEVNNYNITKDASARNHVKPEQWCTSWWHQFKVLLQRGLRERRYDAFNRLRIFQVISVAFLGGLLWWQTPESHIGDRVRISSLQIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYWMGGLKPHPMTFILSLFVVLYSVLVSQSLGLAFGAILMEVKQATTLASVTTLVFLIAGGYYIQQIPPFIEWLKYLSYSYYCYKLLLGVQYNDDDYYECSKGVLCKVGDFPPIKSMGLNHMWVDVFIMALMLVGYRLVAYLALQRVR. 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03175 665 Pfam ABC-2 type transporter 266 361 IPR043926 GO:0140359
Seca12g03175 665 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 57 309 IPR003439 GO:0005524
Seca12g03175 665 Pfam ABC-2 type transporter 397 609 IPR013525 GO:0016020|GO:0140359
Seca12g03175 665 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 37 658 - -
Seca12g03175 665 FunFam ABC transporter G family member 22 75 303 - -
Seca12g03175 665 Pfam ABC transporter 87 237 IPR003439 GO:0005524
Seca12g03175 665 SMART AAA_5 96 286 IPR003593 GO:0016887
Seca12g03175 665 ProSitePatterns ABC transporters family signature. 209 223 IPR017871 GO:0005524|GO:0016887
Seca12g03175 665 Gene3D - 71 303 IPR027417 -
Seca12g03175 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 305 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03175 Seca-Chr12 63435589 63438629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03175 66 285 Calmodulin-binding Proteins AT2G36910 28.947 1.10e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03175 K05681 - gmx:100794774 1127.08