Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03169 ATGGGAGCAGGTTCTTCAGGGGGTGAGATATGGAAGGCTCACACGGCGATGGCAGTGGTTCAATTATTCACTGGAGGCTATCATGTCATCACCAAGTTGGCACTGAACGTTGGGGTCAACCAAATTGTCTTTTGTGTCTTCCGCGATCTCCTTGCCCTTTCCATTCTCGCTCCCATCGCTTATTTCCGTGAAAAACGTACACGACCACCCCTAACCAAGCGCTTCATGATGTCATTCTTCTTTCTTGGATTAACTGGGATATTTGGCAACCATCTTTTGTTTCTTATTGGTTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCAGTCTTTACATTTCTGTTGGCTCTAATGATGGGTACAGAAAGAGTGAACTTACTAAGATATGAAGGTCTGGCCAAGGTTGGGGGAATTTTTACCTGTGTTTTAGGTGCCATATTGATGGTTTTGTATCGTGGTCCAGCATTGATAGGATATTCAGAAATGGACCTTGTATCGCACAGTGAAATAAGTGCCAGAGGTCAACCAGAGCCTTCTGGATGGTTAATTGGTGGTTTAATGGATCTTGGATTAGACCATTTTCATGTTGGAGTTTTGTGCTTCATAGGGAACTGCATGTGCATGGCTGCTTTTCTAGCCATTCAGACCAGATGGTTTGGCTGGAAAACTCATGAAGCAGCCTCAAAGCCAGTCTTGCTAGAGCTCTGGTCCAATTTTCACATCAGCATGGCTCCTTTATTAAAAAAGTATCCTGCAAACATATCTGTCACAGCGTATTCATACTTCTTTGGAGCTTTGCTGATGGTAACTACGTCGTACTTCGTGACTGATGAGTCAACCGACTGGAGATTGACACAATCTGAAACATTTGCCGTATTTTATGCTGGAATTATCGCATCTGCCCTTAATCATGGAATCATTACATGGTCCAACAAGATCTTGGGGCCGGCCATGGTTGCCCTTTATAATCCACTCCAACCTGGGGCTTCTGCTCTCCTGTCCAGAATTTTTCTTGGTAGTCCAATTTACATGGGAAGCGTCATAGGTGGATCTTTGATCATTACTGGTCTATATGCGGTTACTTGGGCATCTTATAGAGAAAGACAGGCAGCTGCTGGAGTTACTCCTCATGGCTCATGGATCCCTGAATCACTTATTCATGACAAGAGTTCATACCATAGAATGCACATTTTCTCAGGGGTCCCCGGCTTATCCCCAAAACCTTCAGATTAA 1248 0.4415 MGAGSSGGEIWKAHTAMAVVQLFTGGYHVITKLALNVGVNQIVFCVFRDLLALSILAPIAYFREKRTRPPLTKRFMMSFFFLGLTGIFGNHLLFLIGLSYTNPTYAAAIQPATPVFTFLLALMMGTERVNLLRYEGLAKVGGIFTCVLGAILMVLYRGPALIGYSEMDLVSHSEISARGQPEPSGWLIGGLMDLGLDHFHVGVLCFIGNCMCMAAFLAIQTRWFGWKTHEAASKPVLLELWSNFHISMAPLLKKYPANISVTAYSYFFGALLMVTTSYFVTDESTDWRLTQSETFAVFYAGIIASALNHGIITWSNKILGPAMVALYNPLQPGASALLSRIFLGSPIYMGSVIGGSLIITGLYAVTWASYRERQAAAGVTPHGSWIPESLIHDKSSYHRMHIFSGVPGLSPKPSD. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03169 415 Pfam EamA-like transporter family 248 366 IPR000620 GO:0016020
Seca12g03169 415 Pfam EamA-like transporter family 17 153 IPR000620 GO:0016020
Seca12g03169 415 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
Seca12g03169 415 SUPERFAMILY Multidrug resistance efflux transporter EmrE 286 371 - -
Seca12g03169 415 PANTHER WAT1-RELATED PROTEIN 15 373 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03169 Seca-Chr12 63239185 63246923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03169 9 300 Nodulin-like Gene Family AT3G45870 62.329 6.46e-117 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03169 - - gmx:100781969 666.766