Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03164 ATGACCATTGGTTTGCCCCCACCAATGGCTCAAAATGCTAGGACAAGCAGATCTTCCTTTAGCTCTAGCAATGGCAATGAGGATACCCCTGTAAACAACTGTGCTGTTGTTAGCAATGCTGATGACTATGATAGTGATAGTTCCAGTTATGCCCCATCCACACCGTCAGTTCTGTCAACAGCTGTTCCAGCAGAACTCGCTGGAGCTGTACCCTTGATTGACAGATTCCAGGTGGATGGATTTTTAAAGTCAATGCAGAAACAAATTCAATCTGCTGGGAAACGTGGATTTTTTTCTAAAAGATCTGTAGGTCCCCAAGCTCGAGAAAAGTTTACATTTGAGGACATGTTGTGTTTTCAAAAGGATCCAATACCAACAGCATTGCTTAAGATTAATGGTGATTTAGTAAGTCGGGCAACAAAATTATTCCAGATAATTTTGAAATATATGGGAGTTGATTCATCTGATCGTGTAACTCCAATAAGCTTAGATGAACGAGTTGAGCTCGCAGGGAAACTATACAAGCAATGTTTGAAACGTTCAGAACTCCGGGATGAACTTTTTGTTCAGATATCAAAACAAACAAGAAATAATCCCGAGAGGCAATGCTTGATCAAAGCTTGGGAGCTTATGTACTTATGTGCATCCTCCATGTCTCCTAGTAAAGACATTGGTGGTTATCTGTCAGAATACATTCATAACATAGCACATGCTATGGGTACTGATCCTGAGATCCAAGCCCTCGCATTAAATACATTAAATGCTTTGAAGCGTTCTGTCAAGGCTGGTCCTAGACATATAATACCTGGGCGAGAGGAGATTGAAGCTCTGTTGACTGGGAGAAAGCTTACAACTATAGTGTTCTTCCTAGATGAAACATTTGAAGAAATTACATATGACATGTCAACAACAGTTGCTGATGCTGTTGAGGAACTTGCAGGGCTCATTAAACTGTCAACATACTCTAGCTTTAGTCTTTTTGAATGTCGTAAAGTTGTTACTGGCTCCAAATCACCTGATCCTGGGAATGAGGAGTATATTGGGTTGGATGATAACAAATATATTGGGGATCTCTTGGCGGAATTTAAAGCATCAAAGGATCGAAGTAAGGGAGAAATCTTGCACTGTAAACTGATATTCAAGAAAAAGTTATTTCGTGAGTCAGATGAAGCTGTGACAGATCCAATGTTTGTGCAATTGTCCTATGTACAATTGCAGCATGATTATATTTTGGGTAATTATCCTATTGGAAGGGATGATGCTGCTCAGCTTTCTGCGTTACAAATCTTGGCTGAGATTGGATTTATTAGCACACCTGAATCATGCACTAACTGGAATTCACTTCTGGAGCGTTTCCTTCCTAGACAAATTTCAATGACACGGGCGAAACGAGAATGGGAGTTTGATATTCTTTCTCGTTATCATTCATTGGTGCATCTGACAAAAGATGATGCAAGACAACAATTTCTGCGTATATTGAGAGCACTTCCTTATGGGAATTCTGTTTTCTTCAATGTTCGCAAGATTGATGATCCTATTGGACTTCTACCTGGACGAATAATATTAGGAATTAATAAAAGAGGGATTCATTTTTTTCGTCCAGTTCCTAAGGAGTATTTACACTCAGCTGAATTGAGAGACATAATGCAATTCGGAAGCAGCAATACAGCAGTCTTTTTTAAAATGCGAGTAGCAGGTGTTCTTCATATATTCCAGTTTGAAACCAAGCAGGGAGAAGAAATTTGCGTAGCTCTTCAAACACATATAAATGATGTAATGCTGCGCCGCTATTCGAAAGCACGGTCCGCTGTTGGTGGTTCTTTGAATGGAGATATTTCTAATAGTTTCAAGCCTCCTAATTTAGAATTATATGAGAAGCGTATTCAAGATTTATCAAAACATGTTGAAGAATCTCAAAGAAATGCTGATCAATTACTTCAAGAATTGCATGAGAAGCAAGAGCAAGAAGAGAAAATGCAAGAAGAATTGGAGGGATTGAAGGAATCCTTAAAAGCTGATAAGCAAAACCTTGAGGCAGTTACAAGTGACTGTGACAGGCTTAGATCATTATGCAAAGAAAAAGATGAGGCACTGCAGGCTGCAATTCTAGAGAAAAGGAATATGGAAGCAAGGATGGCCAAGTTGAGTAATGCGGTGATAGAGAACACTGCCAAACAGGATCTTGTTGGAGCAAATAACGAAATGCTACAAAAGCTTAAATATGAGCTAAAACTATGTAAAGATGAGCTGCATGCAGCCAAGGAAACAATCAAAACCTTGACAAGTGAAAAAATGATTTTGGAACAGACGTTATCTGGGCTTGAGAAAAGGAATGCTGAAGAGAGTAGTTCTCTTCAACGAAAAATTGAGCAAGAACGCAGAGCTACAAAGTCTGTAGTGTATGACCTTGAAAGAAGGCTAGAAGAGTGTAGACAAGAATTGGTGGCTGCTAAGTCTACTATTTCAGTCAAGGACTCTGACTTGGCTGCGTTGCAGAATAATTTAAAGGAGCTAGATGAATTGCGAGAAATGAAAGAGGACATTGATAGAAAAAATGAACAGACAGCTGCCATACTGAAGATGCAAGGGGCTCAACTAGCTGAAATGGAAATTCTTTATAAGGAAGAACAGGTTTTAAGGAAGCGTTATTTTAATATAATAGAAGACATGAAAGGCAAGATCAGAGTTTACTGTCGACTAAGACCTCTGAGTGAAAAGGAGATTGCTGATAAAGAAAGAGAAGCTCTTATTGCGGTAGATGAATATACTGTTGAATATCAATGGAAAGATGATAAGTCAAAGCAATACATATATGATCGTGTTTTTGGTGGTGATGCAACTCAAGAAAGTGTGTTTGAGGATACAAAGTATTTGGTACAATCTGCTGTAGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACTGGTTCTGGAAAGACATTTACAATTTATGGAAGTGAAGACAACCCCGGACTTACTCCTCGTGCTATTGCAGAACTGTTTAGAATTTTAAGAAGGGATAATAACAAGTATTCTTTTTCTTTGAAGGTGTACATGGTGGAATTATATCAAGATACCCTTATAGATCTACTGTTACCTAAAAATGCCAAGCATTTAAAATTGGATATCAAGAAGGATTCCACGGGAATGGTTGTTGTGGAAAATGTAACTGTTATGTCAGTTTCTTCAATTGAAGAGTTAAATAATATAATACAAAGGGGATCTGAACGGAGGCATATATCGGGGACCCAAATGAATGAAGAAAGTTCAAGATCTCATCTTATTTTATCGATTGTAATTGAAAGTACCAACCTTCAAAGTCAGACAGTTGCAAGGGGAAAGCTGAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGCTCTACAGGGAGTCAACTCAAGGAAGCACAAAGTATCAACAAATCATTATCAGCACTTGGAGATGTTATAAGTGCTTTGTCTTCTGGTGGTCAACACACACCTTATAGGAATCACAAGTTAACTATGTTGATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTCATGTTTGTGAATGTTTCTCCAGCAGAATCAAACTTGGATGAGACACATAACTCTCTAATGTATGGTTCTAAAAATAATCTGTATGTTTATTTAGGTATGCATCAAGAGTGA 3669 0.3829 MTIGLPPPMAQNARTSRSSFSSSNGNEDTPVNNCAVVSNADDYDSDSSSYAPSTPSVLSTAVPAELAGAVPLIDRFQVDGFLKSMQKQIQSAGKRGFFSKRSVGPQAREKFTFEDMLCFQKDPIPTALLKINGDLVSRATKLFQIILKYMGVDSSDRVTPISLDERVELAGKLYKQCLKRSELRDELFVQISKQTRNNPERQCLIKAWELMYLCASSMSPSKDIGGYLSEYIHNIAHAMGTDPEIQALALNTLNALKRSVKAGPRHIIPGREEIEALLTGRKLTTIVFFLDETFEEITYDMSTTVADAVEELAGLIKLSTYSSFSLFECRKVVTGSKSPDPGNEEYIGLDDNKYIGDLLAEFKASKDRSKGEILHCKLIFKKKLFRESDEAVTDPMFVQLSYVQLQHDYILGNYPIGRDDAAQLSALQILAEIGFISTPESCTNWNSLLERFLPRQISMTRAKREWEFDILSRYHSLVHLTKDDARQQFLRILRALPYGNSVFFNVRKIDDPIGLLPGRIILGINKRGIHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSAVGGSLNGDISNSFKPPNLELYEKRIQDLSKHVEESQRNADQLLQELHEKQEQEEKMQEELEGLKESLKADKQNLEAVTSDCDRLRSLCKEKDEALQAAILEKRNMEARMAKLSNAVIENTAKQDLVGANNEMLQKLKYELKLCKDELHAAKETIKTLTSEKMILEQTLSGLEKRNAEESSSLQRKIEQERRATKSVVYDLERRLEECRQELVAAKSTISVKDSDLAALQNNLKELDELREMKEDIDRKNEQTAAILKMQGAQLAEMEILYKEEQVLRKRYFNIIEDMKGKIRVYCRLRPLSEKEIADKEREALIAVDEYTVEYQWKDDKSKQYIYDRVFGGDATQESVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEDNPGLTPRAIAELFRILRRDNNKYSFSLKVYMVELYQDTLIDLLLPKNAKHLKLDIKKDSTGMVVVENVTVMSVSSIEELNNIIQRGSERRHISGTQMNEESSRSHLILSIVIESTNLQSQTVARGKLSFVDLAGSERVKKSGSTGSQLKEAQSINKSLSALGDVISALSSGGQHTPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETHNSLMYGSKNNLYVYLGMHQE. 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03164 1222 Gene3D Kinesin motor domain 888 1214 IPR036961 -
Seca12g03164 1222 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 501 609 - -
Seca12g03164 1222 Coils Coil 691 718 - -
Seca12g03164 1222 CDD FERM_C_KCBP 500 606 - -
Seca12g03164 1222 FunFam Kinesin-like calmodulin-binding protein 837 1215 - -
Seca12g03164 1222 Pfam FERM central domain 389 503 IPR019748 -
Seca12g03164 1222 SUPERFAMILY Second domain of FERM 381 498 IPR035963 -
Seca12g03164 1222 SMART B41_5 279 503 IPR019749 -
Seca12g03164 1222 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 282 385 - -
Seca12g03164 1222 Coils Coil 621 683 - -
Seca12g03164 1222 CDD KISc_C_terminal 891 1212 - -
Seca12g03164 1222 Gene3D MyTH4 domain 99 280 IPR038185 -
Seca12g03164 1222 FunFam Kinesin-like calmodulin binding protein 386 497 - -
Seca12g03164 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 893 1210 IPR027417 -
Seca12g03164 1222 SMART MyTH4_1 119 278 IPR000857 GO:0005856
Seca12g03164 1222 MobiDBLite consensus disorder prediction 1 38 - -
Seca12g03164 1222 SUPERFAMILY PH domain-like 503 591 - -
Seca12g03164 1222 Gene3D - 282 386 - -
Seca12g03164 1222 Pfam Kinesin motor domain 899 1210 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g03164 1222 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 98 280 - -
Seca12g03164 1222 Coils Coil 736 777 - -
Seca12g03164 1222 SMART kinesin_4 891 1217 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g03164 1222 Gene3D - 501 607 IPR011993 -
Seca12g03164 1222 SUPERFAMILY Prismane protein-like 836 897 IPR011254 GO:0003824|GO:0016491
Seca12g03164 1222 Gene3D - 395 496 IPR014352 -
Seca12g03164 1222 ProSiteProfiles FERM domain profile. 283 597 IPR000299 GO:0005856
Seca12g03164 1222 PANTHER MYOSIN VII, XV 7 899 - -
Seca12g03164 1222 ProSiteProfiles Kinesin motor domain profile. 893 1214 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g03164 1222 PRINTS Kinesin heavy chain signature 1164 1185 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g03164 1222 PRINTS Kinesin heavy chain signature 1084 1101 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g03164 1222 PRINTS Kinesin heavy chain signature 965 986 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g03164 1222 PRINTS Kinesin heavy chain signature 1115 1133 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g03164 1222 Pfam MyTH4 domain 172 276 IPR000857 GO:0005856
Seca12g03164 1222 Coils Coil 800 858 - -
Seca12g03164 1222 ProSitePatterns Kinesin motor domain signature. 1114 1125 IPR019821 GO:0003777|GO:0005524|GO:0007018
Seca12g03164 1222 ProSiteProfiles MyTH4 domain profile. 119 278 IPR000857 GO:0005856
Seca12g03164 1222 MobiDBLite consensus disorder prediction 9 38 - -
Seca12g03164 1222 CDD FERM_B-lobe 398 496 IPR019748 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03164 Seca-Chr12 63111332 63123821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03164 29 1210 Calmodulin-binding Proteins AT5G65930 73.596 0.0 1782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03164 - - gmx:100807481 1984.15