Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03161 ATGCAGCAGGAATTCGAGGAAGGTCTTCTGTTATTCCGTTCAAATTGGATGCAATGGAAGGAGAAAGGAGGTGCATTGCAGCCACATCGCACCAAGATACCAATCGTGAAAAGTGACATAACCCCAAGCGAAGACCTCATCTCTAACTCAAATTTTCTGACGAAAAGCGGCATAGAGGAATCGTTCTTCTTCGACCAATCGGAACTTCGCTCTAGGTGGGGTTTGGATGATATGAGCATTACTGATGAAGAAGTTGAAGAAAGTAGTGATGAGGAGGACAATGATCCTTGTGGTGAAACAGATGGTGAATATAGTGGTGATGGAATGGAACGTGCTAATATGGAAGAAGTTATCAATATAGATAGTTTTCAGGATATTCGAAATTTGAATATGAAGAATATTAGCCCCGAAGATGTAAAGCGGTGTGATTTTGCTAACATGGGCCTTGCATATGAGTTCTATTCTGAATATGCAAAAGGAGGGGGAAGGGATAAAAAGAGGCAAACCAATAAACCTAAGCGTGAAGCAAAACGTGAAATAAGGTGTGGTTGTAAGGCAAGACTTCGAGTCCATGTTGACATCAATTCTGGTCGTTGGTATGTGACAATTTTTTATCATTTACACAACCATGAGATGCTAGGTGAAAGGCTTTGTGCCATGTTGCCAGCCCATAGGAAAATGAGTCTAGCAGATATAATGGAAATGAAAAGCTTGAGAAATGTTGGGATAAGCACACCTGATATCTATGTTGCATTTGCAAGCCTTCGTGCACATGATCCATACTTGTACTACCGGCATACTGTTGATGAAGAAGATAGATTGCGACACCTATTTTGGTGTGATGGTATTCGTCAAATGAATTACCAAGTTTTTGGTGATGTTTTGGCCTTCGATGCGACTTATGGCAAGAACAAATATCGAAGTCCATTGGTGGTATTTTCGGGGGTCAATCACCATAACCGTACAACTATTTTTGCTAGTGCAGTTGTTGCTAATGAGACGAAAGACACATATGTGTGGCTGCTTCAAAAATTTAATGTAGTTATGAAAGGAAAGTCACCAAAATTAGTCATTACAGACAGAGATATGGCCATGAGGAATGCAATAAAAAGAGTATTTCCAAATGCTCATCACCGCTTATGTGCTTGGCACTTACTTCGCAATTCCACCAGTAATGTTGGAATACCGGATTTTATTTCTGATCTAAAGAGTGTAGTTGTTGCTAATGAGACGGAAGACACATATGTGTGGCTGCTTCAAAAATTTAATGAAGTTATGAAAGGAAAGTCACCAAAATTAGTCATTACAAACGACAATATGGCCATGAGGAATGCAATAAAAAGAGTATTTCCAAATGCTCATCATCGCTTATGTGCTTGGAACTTACTTCGCAATGCCACCAGTAATGTTGGAATTCCTGATTTTATTTTTGATCTAAAGAGGTGCATGTTCAGTAATATTGATGTGGCAGAATTTCAAATCCGATGGGACCAAATGGTGTCTAAATTTGGCTTGGAAGATCATTGTTGGGTGAAAGAGTTGTACGAGAAGCGAAAGATGTGGGCCTCATCACATATCAGAGGTAATTTTTTTGCTGGACTAAGAACCACATCTCGATTGGAAAGTCTACATGCTCAATTTGGTAAGTTTGTGAAGTCACGAAATAACCTTATAGAGTTTATTCAACATTTCCAACATGCCCTTAATTACATGAGATTTAAGGAAGAAGAATATGACTTTGCCTTTGTTCTTGGTGAGGTTGTGTTGAAGACAAATTACCATACATTAGAGCGGTCAGCATCTAAGCACTTCAAAAGCCAGATTTTTTTAATGTTTCGTAAGGTGTTGGAGAAAACATCTCAAACTATTGTAGTTGGTTGTAGAGAGGCAGCAATGTGCTCCATATATACCATTTCAAAATATCAGGGTGGTGGAAGAGAGTGGTATGTGTCATTTTACTCACTAACTATTGAGTTCACATGCACTTGCCAGAAAATGGAATGCTATGGACTTCCTTGTGAGCACATAATGGCTGTTTTGGTGTATTTAGATGCTACCGAAATCCCAAAGTCTTTAATTCTGGATAGGTGGACCAAGATTGCTCTTGGTAAGGAGTCAATTCGTGGATCTTTCAGTGATGCTTCTTATTTTTGGGACTCTCAATTGATGGCTCGATATCATGGTGCACAATTCGCCCAAGAAAATACCGAGTCTCAAATCTTGGATGGGAATTTGCCGAATCCAACCAATGTAAGGTCGAAAGGGTGTGGAACTAGATCTGGTTCTAGAACTACAAGAGGTAGGCGCTTGAACAAGTGTAGTGTTTGTGAGGTTGCTGGCCATAACAAGAAATCTTGCCCACAACAAAGGCCCGTTAATGATGTTGACCCATCTATGTGTGGCAACTCAATGCGAGAGGTTGGTGAAGGTAGCAGTCTCAACAACATCAACCTTTTTGTAGACTTGGCATCTTGTGACTCCATAATTTTCATGGCCCTCTGGCGTGGAGCTGTCAATTCCATTGGAGAATATCTATATCAATGA 2544 0.3994 MQQEFEEGLLLFRSNWMQWKEKGGALQPHRTKIPIVKSDITPSEDLISNSNFLTKSGIEESFFFDQSELRSRWGLDDMSITDEEVEESSDEEDNDPCGETDGEYSGDGMERANMEEVINIDSFQDIRNLNMKNISPEDVKRCDFANMGLAYEFYSEYAKGGGRDKKRQTNKPKREAKREIRCGCKARLRVHVDINSGRWYVTIFYHLHNHEMLGERLCAMLPAHRKMSLADIMEMKSLRNVGISTPDIYVAFASLRAHDPYLYYRHTVDEEDRLRHLFWCDGIRQMNYQVFGDVLAFDATYGKNKYRSPLVVFSGVNHHNRTTIFASAVVANETKDTYVWLLQKFNVVMKGKSPKLVITDRDMAMRNAIKRVFPNAHHRLCAWHLLRNSTSNVGIPDFISDLKSVVVANETEDTYVWLLQKFNEVMKGKSPKLVITNDNMAMRNAIKRVFPNAHHRLCAWNLLRNATSNVGIPDFIFDLKRCMFSNIDVAEFQIRWDQMVSKFGLEDHCWVKELYEKRKMWASSHIRGNFFAGLRTTSRLESLHAQFGKFVKSRNNLIEFIQHFQHALNYMRFKEEEYDFAFVLGEVVLKTNYHTLERSASKHFKSQIFLMFRKVLEKTSQTIVVGCREAAMCSIYTISKYQGGGREWYVSFYSLTIEFTCTCQKMECYGLPCEHIMAVLVYLDATEIPKSLILDRWTKIALGKESIRGSFSDASYFWDSQLMARYHGAQFAQENTESQILDGNLPNPTNVRSKGCGTRSGSRTTRGRRLNKCSVCEVAGHNKKSCPQQRPVNDVDPSMCGNSMREVGEGSSLNNINLFVDLASCDSIIFMALWRGAVNSIGEYLYQ. 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03161 847 MobiDBLite consensus disorder prediction 75 107 - -
Seca12g03161 847 SMART 26again6 659 686 IPR006564 GO:0008270
Seca12g03161 847 Pfam SWIM zinc finger 660 682 IPR007527 GO:0008270
Seca12g03161 847 Pfam MULE transposase domain 405 465 IPR018289 -
Seca12g03161 847 Pfam MULE transposase domain 294 388 IPR018289 -
Seca12g03161 847 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 405 715 IPR031052 GO:0006355
Seca12g03161 847 ProSiteProfiles Zinc finger SWIM-type profile. 653 684 IPR007527 GO:0008270
Seca12g03161 847 Pfam FAR1 DNA-binding domain 162 212 IPR004330 -
Seca12g03161 847 MobiDBLite consensus disorder prediction 80 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03161 Seca-Chr12 63047453 63054035 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g03161 MULE 1.2e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03161 - - tpra:123914619 380.948