Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03139 ATGAATTGTTATCAGGTTGCTACGATTCTTCAACCAGTACCTGAATCAAGCACATTCTTGCTTCCTCATGGTGTTAGGCCTGAGGAGCCTTGGACTGAAATAGAGCATGAGTTATTTTTGGCGGGGCTAATCAAGTATGGAAAAGGACATTGGACAAAAATTGCTAGACATTTTCTAGGGAACAAGACACCACAACAAGTTCAAAGCTATGCTACTGGCTTCTTCAGGAACCTACCAGCCACACACTTTTTCAACTATAGGAGAAGGAAACCCGCCAACCATTCCGCTGGTAGACTTATGGCCAGAAACAGGAACCTCATGAATGCACCTGCCTCCCATTCCATGCAAATGGTTCTTAACAAACCACAACAAACCCTCACTCTCTTCCCAGAAAAAACTCATTTTTCTCAGGTTTCACCATTCGGAGAAGGTAGCAGTAGCATCAACCATATCCACGGGTTCCAGATGCTGACAGGTGGTGCAAGCACTTCCATGACAACTAGTGCTAATGGAGAAGTTGATTTGGAACTGTGCTTGGGAAGATATTAG 549 0.4426 MNCYQVATILQPVPESSTFLLPHGVRPEEPWTEIEHELFLAGLIKYGKGHWTKIARHFLGNKTPQQVQSYATGFFRNLPATHFFNYRRRKPANHSAGRLMARNRNLMNAPASHSMQMVLNKPQQTLTLFPEKTHFSQVSPFGEGSSSINHIHGFQMLTGGASTSMTTSANGEVDLELCLGRY. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03139 182 SUPERFAMILY Homeodomain-like 30 78 IPR009057 -
Seca12g03139 182 ProSiteProfiles SANT domain profile. 26 79 IPR017884 -
Seca12g03139 182 CDD SANT 30 71 IPR001005 -
Seca12g03139 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 79 IPR017930 -
Seca12g03139 182 SMART sant 27 77 IPR001005 -
Seca12g03139 182 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 28 96 IPR043363 -
Seca12g03139 182 Pfam Myb-like DNA-binding domain 29 70 IPR001005 -
Seca12g03139 182 Coils Coil 179 182 - -
Seca12g03139 182 NCBIfam myb-like DNA-binding domain, SHAQKYF class 27 75 IPR006447 GO:0003677
Seca12g03139 182 Gene3D - 29 79 - -
Seca12g03139 182 ProSiteProfiles Myb-like domain profile. 30 75 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03139 Seca-Chr12 62534417 62535183 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca12g03139 Myb_DNA-binding 4.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03139 - - gsj:114414101 212.231