Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03123 ATGATCCTTAATTTTGGTCTTGTTTCTGCAGAAAATGTTCAATTCAAAAATGCTCTTATGCCCCCATGGGCTTACTTGAATCCTATTCTTCACCATACCAACCAGCACCAAACTACTCTGTCTCTGGCTCTAGGACTCACCCATGAGCCCTCTCAGAATATCACTACCTGGATCCAATCCAACATGAATGGTTATCAAGTTGCTACGATTCCTCAACCAGTACCTGAATCAAGCACATTCTTGCTTCCTCACGGTGTTAGACCTGAGGAGCCTTGGACTGAAACAGAACATCAGTTATTTTTGGCGGGGCTAATCATGTACGGAAAAGGGCATTGGAAAAAAATTGCTAGACACTTTCTAGGGAACAAGACACCACAACAAGTTCAAAGCTATGTTGCTGGCTTCTTCTGGAACCTTCCAGCCACACACTTTTTCAACTTTAGGAGAAGGAAACCCACCAACCATTCTGCTGGTAAACTTATGGCCAGAAACGGGAACCTCATGAGTGCACCTACCTCACGTTCCATGCAAATGGTTCTTAAAAAACCACAACAAACCCTCACTCTCTTCCCAGAGGAAGCTCATTTTTCTCAGGTTTCACCTTTCGGAGAAGGTAGCAGTAGCAGCAACCATATCGACGGGTTCCAGATGCTGACAGGTGGTGCAAGCACTTCCTTGACAACTAGTTCTAATGGAGAAGTTGATTTGGAACTGCGCTTGGGTTGA 726 0.4477 MILNFGLVSAENVQFKNALMPPWAYLNPILHHTNQHQTTLSLALGLTHEPSQNITTWIQSNMNGYQVATIPQPVPESSTFLLPHGVRPEEPWTETEHQLFLAGLIMYGKGHWKKIARHFLGNKTPQQVQSYVAGFFWNLPATHFFNFRRRKPTNHSAGKLMARNGNLMSAPTSRSMQMVLKKPQQTLTLFPEEAHFSQVSPFGEGSSSSNHIDGFQMLTGGASTSLTTSSNGEVDLELRLG. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03123 241 Pfam Myb-like DNA-binding domain 90 131 IPR001005 -
Seca12g03123 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 128 IPR017930 -
Seca12g03123 241 CDD SANT 91 131 IPR001005 -
Seca12g03123 241 SMART sant 88 138 IPR001005 -
Seca12g03123 241 NCBIfam myb-like DNA-binding domain, SHAQKYF class 88 132 IPR006447 GO:0003677
Seca12g03123 241 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 84 149 IPR043363 -
Seca12g03123 241 SUPERFAMILY Homeodomain-like 91 138 IPR009057 -
Seca12g03123 241 ProSiteProfiles Myb-like domain profile. 91 136 IPR001005 -
Seca12g03123 241 Gene3D - 90 140 - -
Seca12g03123 241 ProSiteProfiles SANT domain profile. 87 131 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03123 Seca-Chr12 61430224 61431165 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca12g03123 Myb_DNA-binding 1.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03123 - - gmx:102663307 221.861