Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03121 ATGAATGGTTATCAGGTTGCTACAATTCCTCAACCAGTACCTGAATCAAACACATTCTTGCTTCCTCATGGTGTTAGACCTGAGGAGCCTTGGACTGAAATAGAGCATCAGTTATTTTTGGCGGGGCTAATCAAGTATGGAAAAGGACATTGGACAAAAATTGCTAGACACTTTCTAGGGAACAAGACACCACAACAATTTCAAAGCTATGTTGCTGGCTTCTTCAGGAACCTACCAGCCACACACTTTTTCAACTTTAGGAGAAGGAAACCCGCCAACCATTTCACTGGAAAACTTATGGCCAGAAACGGGAACCTCATGAATGCACCTGCCTCACGTTCCATGCAAATGCTTCTTTTCTTAACAAACCACAACAAACGCTCACTCTCTTCCTAG 396 0.4318 MNGYQVATIPQPVPESNTFLLPHGVRPEEPWTEIEHQLFLAGLIKYGKGHWTKIARHFLGNKTPQQFQSYVAGFFRNLPATHFFNFRRRKPANHFTGKLMARNGNLMNAPASRSMQMLLFLTNHNKRSLSS. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03121 131 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 28 76 IPR043363 -
Seca12g03121 131 SMART sant 27 77 IPR001005 -
Seca12g03121 131 Pfam Myb-like DNA-binding domain 29 68 IPR001005 -
Seca12g03121 131 ProSiteProfiles SANT domain profile. 26 79 IPR017884 -
Seca12g03121 131 SUPERFAMILY Homeodomain-like 30 78 IPR009057 -
Seca12g03121 131 Gene3D - 29 79 - -
Seca12g03121 131 ProSiteProfiles Myb-like domain profile. 30 75 IPR001005 -
Seca12g03121 131 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 66 IPR017930 -
Seca12g03121 131 CDD SANT 30 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03121 Seca-Chr12 61375436 61376052 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca12g03121 Myb_DNA-binding 9.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03121 - - gmx:102663307 154.066